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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcacattctgaaaccgaaccattttcttggtcccattattgaaacactgaacccatttctttatgcatttcttctcaaatattcttctctcatttccatcttgatcttcagGTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATCATCGTCATACACCAATCTGTCACATTTCTCAAGAGTGTAACTTTGATCATTTTTACTTATTG

Basic information

species Arabidopsis thaliana
transcript AT2G24765.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164084858|gb|ES066035.1|ES066035
EST:     ACTTGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGATTGGACTG                         GTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATCATCGTCATACACC
genomic: ACTTGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGATTGGACTGgtaagcacat ... tgatcttcagGTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATCATCGTCATACACC
EST: gi|164056138|gb|ES049219.1|ES049219
EST:     TTCAAAACTTGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGATTGGACTG                         GTTGAGTAATACATTGAAGTCGGGAAGTGG
genomic: TTCAAAACTTGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGATTGGACTGgtaagcacat ... tgatcttcagGTTGAGTAATACATTGAAGTCGGGAAGTGG
EST: gi|125142669|gb|EL179823.1|EL179823
EST:     GGGACTTTTCGAGGGATTGGACTG                         GTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATCATCGTCATACACC
genomic: GGGACTTTTCGAGGGATTGGACTGgtaagcacat ... tgatcttcagGTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATCATCGTCATACACC
EST: gi|125218744|gb|EL232827.1|EL232827
EST:     CAAAACTTGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGATTGGACTG                         GTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATCATCGTCATACACC
genomic: CAAAACTTGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGATTGGACTGgtaagcacat ... tgatcttcagGTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATCATCGTCATACACC
EST: gi|164165575|gb|ES191934.1|ES191934
EST:     TCGAGGGATTGGACTG                         GTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATCATCGTCATACACC
genomic: TCGAGGGATTGGACTGgtaagcacat ... tgatcttcagGTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATCATCGTCATACACC
EST: gi|125204230|gb|EL219184.1|EL219184
EST:     ACTTTTCGAGGGATTGGACTG                         GTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATCATCGTCA
genomic: ACTTTTCGAGGGATTGGACTGgtaagcacat ... tgatcttcagGTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATCATCGTCA
EST: gi|19877752|gb|AU238583.1|AU238583
EST:     TTCAAAACTTGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGATTGGACTG                         GTTGAGTAATACATTGAAGTCGGGAAGTGGCT
genomic: TTCAAAACTTGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGATTGGACTGgtaagcacat ... tgatcttcagGTTGAGTAATACATTGAAGTCGGGAAGTGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctttatgcatttcttctcaaatattcttctctcatttccatcttgatcttcagGTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATCATCGTCATACACCAATCTGTCACATTTCTCAAGAGTGTAACTTTGATCATTTTTACTTATTG
                                          tcttgat  putative branch site (score: 4)
                         ttcttctctcatttcc  CT-rich tract
                    aaatattctt  TA-rich tract