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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcatttacttagactaatctctttttggattctatttgtatcatccaagttggaatctgagacatttggttttcttctcattatttcagATGGTGCTTCATGGAGGAGCACATCGAGCGAGGCAGGTGGTGAAAGTGTTGAACAGCGAAGGGAAAGTCATTGCTTATGCAAAACCTTCATATACATGG

Basic information

species Arabidopsis thaliana
transcript AT2G21520.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124927359|gb|EL005103.1|EL005103
EST:     TGGAAAAACCCGGAAATTGTGAAG                         ATGGTGCTTCATGGAGGAGCACATCGAGCGAGGCAGGTGGTGAAAGTGTTG
genomic: TGGAAAAACCCGGAAATTGTGAAGgtcatttact ... attatttcagATGGTGCTTCATGGAGGAGCACATCGAGCGAGGCAGGTGGTGAAAGTGTTG
EST: gi|86064746|gb|DR360503.1|DR360503
EST:     GTTGCATGCTTTCTGACAAGGGACCTTGGAAAAACCCGGAAATTGTGAAG                         ATGGTGCTTCATGGAGGAGCACATCGAGCGAGGCAGGTGGTGAAAGTGTTG
genomic: GTTGCATGCTTTCTGACAAGGGACCTTGGAAAAACCCGGAAATTGTGAAGgtcatttact ... attatttcagATGGTGCTTCATGGAGGAGCACATCGAGCGAGGCAGGTGGTGAAAGTGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtatcatccaagttggaatctgagacatttggttttcttctcattatttcagATGGTGCTTCATGGAGGAGCACATCGAGCGAGGCAGGTGGTGAAAGTGTTGAACAGCGAAGGGAAAGTCATTGCTTATGCAAAACCTTCATATACATGG
                                   ttttcttctcattatt  CT-rich tract
                                           tcattattt  TA-rich tract