1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagttctctctcactgtcttttttctacacacttcttcagttataaatatcttttgttgaacctccaaatttctcttgtagATCAATCCCCTTGCGGAGACATCAACTAATCAATTGGTAGCTGCTGATGCCAAATTGAACTTCGATGATAATGCTGCGTTCCGACAAAAAGAGGTTTTCG
species | Arabidopsis thaliana |
transcript | AT2G20420.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGAAGAAGCTATACGAACTCTTCCGCAAGACTGACTGCACAATGTTGGAA ATCAATCCCCTTGCGGAGACATCAACTAATCAAEST: gi|116476127|gb|EG518719.1|EG518719
genomic: TGAAGAAGCTATACGAACTCTTCCGCAAGACTGACTGCACAATGTTGGAAgtgagttctc ... tctcttgtagATCAATCCCCTTGCGGAGACATCAACTAATCAA
EST: TGAAGAAGCTATACGAACTCTTCCGCAAGACTGACTGCACAATGTTGGAA ATCAATCCCCTTGCGGAGACATCAACTAATCAATTGGTAGCTGCTGATGCCEST: gi|124906877|gb|EH980957.1|EH980957
genomic: TGAAGAAGCTATACGAACTCTTCCGCAAGACTGACTGCACAATGTTGGAAgtgagttctc ... tctcttgtagATCAATCCCCTTGCGGAGACATCAACTAATCAATTGGTAGCTGCTGATGCC
EST: AGAAGCTATACGAACTCTTCCGCAAGACTGACTGCACAATGTTGGAA ATCAATCCCCTTGCGGAGACATCAACTAATCAATTGGTAGCTGEST: gi|116485864|gb|EG528456.1|EG528456
genomic: AGAAGCTATACGAACTCTTCCGCAAGACTGACTGCACAATGTTGGAAgtgagttctc ... tctcttgtagATCAATCCCCTTGCGGAGACATCAACTAATCAATTGGTAGCTG
EST: TGAAGAAGCTATACGAACTCTTCCGCAAGACTGACTGCACAATGTTGGAA ATCAATCCCCTTGCGGAGACATCAACTAATCAATTGGTAGCTGCTGATGCC
genomic: TGAAGAAGCTATACGAACTCTTCCGCAAGACTGACTGCACAATGTTGGAAgtgagttctc ... tctcttgtagATCAATCCCCTTGCGGAGACATCAACTAATCAATTGGTAGCTGCTGATGCC
acacacttcttcagttataaatatcttttgttgaacctccaaatttctcttgtagATCAATCCCCTTGCGGAGACATCAACTAATCAATTGGTAGCTGCTGATGCCAAATTGAACTTCGATGATAATGCTGCGTTCCGACAAAAAGAGGTTTTCG
tttctcttgt CT-rich tract
ttataaatatcttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttctctctcactgtcttttttctacacacttcttcagttataaatatcttttgttgaacctccaaatttctcttgtagATCAATCCCCTTGCGGAGACATCAACTAATCAATTGGTAGCTGCTGATGCCAAATTGAACTTCGATGATAATGCTGCGTTCCGACAAAAAGAGGTTTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG