1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...taaattttgaaagcaaaagtgaacctgggatggttaatataaactttttgtcatcagcatgctgcttctagtcagttcatgatatatatgtgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGAACCCCTGGTCAATGTTCGTTAAAAAATATGGTTTCCTCCCGCTCATAG
species | Arabidopsis thaliana |
transcript | AT2G20360.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAG GCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGEST: gi|116401381|gb|EG443973.1|EG443973
genomic: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAGgtatacttac ... tgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTG
EST: TGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAG GCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGEST: gi|116377195|gb|EG419787.1|EG419787
genomic: TGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAGgtatacttac ... tgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTG
EST: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAG GCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGEST: gi|124855581|gb|EH940018.1|EH940018
genomic: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAGgtatacttac ... tgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTG
EST: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAG GCAACCATCATGAGACCTGCAAEST: gi|116401379|gb|EG443971.1|EG443971
genomic: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAGgtatacttac ... tgttttgtagGCAACCATCATGAGACCTGCAA
EST: GGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAG GCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGEST: gi|116377193|gb|EG419785.1|EG419785
genomic: GGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAGgtatacttac ... tgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTG
EST: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAG GCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGEST: gi|164214029|gb|ES099135.1|ES099135
genomic: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAGgtatacttac ... tgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTG
EST: CTGAGGAAGCTGTCTTGAACGCACTGCCTGAG GCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGEST: gi|116401374|gb|EG443966.1|EG443966
genomic: CTGAGGAAGCTGTCTTGAACGCACTGCCTGAGgtatacttac ... tgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTG
EST: GGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAG GCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGEST: gi|163993592|gb|ES082836.1|ES082836
genomic: GGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAGgtatacttac ... tgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTG
EST: GGAAGCTGTCTTGAACGCACTGCCTGAG GCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGEST: gi|116401371|gb|EG443963.1|EG443963
genomic: GGAAGCTGTCTTGAACGCACTGCCTGAGgtatacttac ... tgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTG
EST: GAGGAAGCTGTCTTGAACGCACTGCCTGAG GCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGEST: gi|86048714|gb|DR344469.1|DR344469
genomic: GAGGAAGCTGTCTTGAACGCACTGCCTGAGgtatacttac ... tgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTG
EST: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAG GCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGEST: gi|116401376|gb|EG443968.1|EG443968
genomic: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAGgtatacttac ... tgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTG
EST: GAGGAAGCTGTCTTGAACGCACTGCCTGAG GCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGEST: gi|116383740|gb|EG426332.1|EG426332
genomic: GAGGAAGCTGTCTTGAACGCACTGCCTGAGgtatacttac ... tgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTG
EST: GGGCAAAAGCCGTTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAG GCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGEST: gi|116377192|gb|EG419784.1|EG419784
genomic: GGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAGgtatacttac ... tgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTG
EST: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAG GCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGEST: gi|116377191|gb|EG419783.1|EG419783
genomic: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAGgtatacttac ... tgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTG
EST: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAG GCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGEST: gi|116383739|gb|EG426331.1|EG426331
genomic: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAGgtatacttac ... tgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTG
EST: GGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAG GCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGEST: gi|116377190|gb|EG419782.1|EG419782
genomic: GGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAGgtatacttac ... tgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTG
EST: CGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAG GCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGEST: gi|116383744|gb|EG426336.1|EG426336
genomic: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAGgtatacttac ... tgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTG
EST: GGGCAAAAGCTCGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAG GCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGEST: gi|116377199|gb|EG419791.1|EG419791
genomic: GGGCAAAAGCT-GCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAGgtatacttac ... tgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTG
EST: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAG GCAAACATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGEST: gi|116387790|gb|EG430382.1|EG430382
genomic: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAGgtatacttac ... tgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTG
EST: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAG GCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGEST: gi|116377200|gb|EG419792.1|EG419792
genomic: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAGgtatacttac ... tgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTG
EST: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAG GCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGEST: gi|47828656|gb|CK118340.1|CK118340
genomic: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAGgtatacttac ... tgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTG
EST: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAG GCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGEST: gi|164156982|gb|ES090230.1|ES090230
genomic: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAGgtatacttac ... tgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTG
EST: AAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAG GCAACCATCATGAGACCTGCAACCATGATTGGTACEST: gi|116377196|gb|EG419788.1|EG419788
genomic: AAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAGgtatacttac ... tgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTAC
EST: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAG GCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGEST: gi|116377187|gb|EG419779.1|EG419779
genomic: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAGgtatacttac ... tgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTG
EST: CGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAG GCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTG
genomic: TGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAGgtatacttac ... tgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTG
ttttgtcatcagcatgctgcttctagtcagttcatgatatatatgtgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGAACCCCTGGTCAATGTTCGTTAAAAAATATGGTTTCCTCCCGCTCATAG
atatatatgtgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaattttgaaagcaaaagtgaacctgggatggttaatataaactttttgtcatcagcatgctgcttctagtcagttcatgatatatatgtgttttgtagGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGAACCCCTGGTCAATGTTCGTTAAAAAATATGGTTTCCTCCCGCTCATAG
- - - - - aagcaaa
- - - - - - - - - - - - - - - - - -aatataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgcttc