1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtacatttctctcaatgttattccttgattttaggtctgttgtgttcataatggttatacttaccaagtgtcctacggggttcagAAAGAAGTTGTGTATGGTCTAACAGAGATACTAAGGGAGGACATAAAAAAGGCACGACTTGTGGCTAACCCAGGCTGTTACCCGACTACGATTCAACTTC
species | Arabidopsis thaliana |
transcript | AT2G19940.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGGTCAGCCTCACAAGGCAGTAGAGTTACAEST: gi|124863207|gb|EH947644.1|EH947644
genomic: ATGGTCAGCCTCACAAGGCAGTAGAGTTACA
EST: ATGGTCAGCCTCACAAGGCAGTAGAGTTACA
genomic: ATGGTCAGCCTCACAAGGCAGTAGAGTTACA
ttaggtctgttgtgttcataatggttatacttaccaagtgtcctacggggttcagAAAGAAGTTGTGTATGGTCTAACAGAGATACTAAGGGAGGACATAAAAAAGGCACGACTTGTGGCTAACCCAGGCTGTTACCCGACTACGATTCAACTTC
tacttac putative branch site (score: 1)
ttatactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatttctctcaatgttattccttgattttaggtctgttgtgttcataatggttatacttaccaagtgtcctacggggttcagAAAGAAGTTGTGTATGGTCTAACAGAGATACTAAGGGAGGACATAAAAAAGGCACGACTTGTGGCTAACCCAGGCTGTTACCCGACTACGATTCAACTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT