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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaactgccactttacagctaaataatatgtttgcttgtaccatttccttttggctgaacaatctgtttctttattccagTGGAGTCCAGCCGAAGAAAACGTGTTTGCCTCATGTTCTGTGGATGGGAGTGTTGCAGTCTGGGATATTCGACTTGGGAAGTCCCCTGCACTATCTTTCA

Basic information

species Arabidopsis thaliana
transcript AT2G19540.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G19540.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv11s0016g02270.t01 (Vitis vinifera), 3'ss of exon 7
----------------------------------------------------gtaaaa-ctgccactttacagctaaataatatgtttgcttgtaccatttccttttggctgaacaatctgtttctt---------tattc-------cagTGGAGTCCAGCCGAAGAAAACGTGTTTGCCTCATGTTCTGTGGATGGGAGTGTTGCAGTCTGGGATATTCGACTTGGGAAGTCCCCTGCACTATCTTTCA
                                                     || |  |||    | |    ||| ||     | || |||  |   |||  | ||  || | ||||   | ||           ||||        |||||||| ||  | ||||   | ||||||||||| |||||||||||||||| | ||||| | |||||||  || || || | ||| || |||   || || |
gtatgtatctaattggtgaagcaatagttgtatctgtttgaattttgagtatttagagtctgatcttatgttcctatatgggtggctttcttaaaatgtttaatctt--ctaagcaattcttctccccccccaaaatatttaccaatgcagTGGAGCCCTACAGAAGTTCATGTGTTTGCCTCTTGTTCTGTGGATGGGAATATTGCAATATGGGATACACGTCTAGGAAGGTCACCAGCAGCTTCCTTTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgtttgcttgtaccatttccttttggctgaacaatctgtttctttattccagTGGAGTCCAGCCGAAGAAAACGTGTTTGCCTCATGTTCTGTGGATGGGAGTGTTGCAGTCTGGGATATTCGACTTGGGAAGTCCCCTGCACTATCTTTCA
                                     tctgtttctttattcc  CT-rich tract
                                         tttctttatt  TA-rich tract