Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactgcaaagtgcatcaaccattcttatacttgcaagagtttcttgtctaaacctcggatctttgcttttccccagCCAAGTTATCCACGTTCTGCATGTATACGGAAGGGTTGGGTGGCTCGTCAATTTGCAAAACTGGTCATATTCACCGGATTCATGGGATTTATAATAGAAC

Basic information

species Arabidopsis thaliana
transcript AT2G19450.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125086166|gb|EL145732.1|EL145732
EST:     GCTTGAAGAGCTTGGCATATTTCATGGTCGCTCCCACATTGTGTTATCAG                         CCAAGTTAATCCACGTTCTGCATGTATACGGAAG
genomic: GCTTGAAGAGCTTGGCATATTTCATGGTCGCTCCCACATTGTGTTATCAGgtaactgcaa ... ttttccccagCCAAGTTA-TCCACGTTCTGCATGTATACGGAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttatacttgcaagagtttcttgtctaaacctcggatctttgcttttccccagCCAAGTTATCCACGTTCTGCATGTATACGGAAGGGTTGGGTGGCTCGTCAATTTGCAAAACTGGTCATATTCACCGGATTCATGGGATTTATAATAGAAC
                        gtctaaa  putative branch site (score: 3)
                                      tctttgcttttcccc  putative PPT