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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccaccatgacaatttagctttctcaggccttatatttcattgaatcaatgtgttactgacacatatggcgcaatatgatattttcagGTGGATGCATATGAGGCGAAAAATCAAGAACTGATGGCAGAGAACACTGATCTGAGAGCGTTACTACGATCAACGCAG

Basic information

species Arabidopsis thaliana
transcript AT2G18876.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G18876.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA17G07040.2 (Glycine max), 3'ss of exon 9
gtaaccaccatgacaatttagctttctcaggccttatatttcattgaatc---aatgtgttactgacacatatggcgcaatat-gatattttcagGTGGATGCATATGAGGCGAAAAATCAAGAACTGATGGCAGAGAACACTGATCTGAGAGCGTTACTACGATCAACGCAG
|||  ||   ||| ||  |   |  ||| | | ||| | ||| ||| ||     |    |    | | ||||      | | |  || ||   |||||||||| |||||| | ||||||||||||||||||||||||||  ||||| | ||||| ||| |  |||||| ||||
gtatgcatattgataaact--ttcactctgtcattacagttctttgtattcgggacacatcctcgtctcatacaatttatttttaatgttgaaagGTGGATGCTTATGAGTCAAAAAATCAAGAACTGATGGCAGAGAATGCTGATTTAAGAGCATTATTGAGATCAATGCAG

upper sequence: AT2G18876.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA13G00980.1 (Glycine max), 3'ss of exon 9
gtaaccaccatgacaatttagctttctcaggccttatatttcattgaatc---aatgtgttactgacacatatggcgcaatat-gatattttcagGTGGATGCATATGAGGCGAAAAATCAAGAACTGATGGCAGAGAACACTGATCTGAGAGCGTTACTACGATCAACGCAG
|||  ||   ||| ||  |   |  ||| | | ||||| ||| ||| ||     |           | ||||      | | |  || ||   |||||||||| |||||| | || |||||||||||||||||||||||  ||||| | ||||| ||| |  |||||| ||||
gtatgcatattgaaaaact--ttcactctgtcattatagttctttgtattcgggacacaccctcatctcatacaatttatttttaatgttgaaagGTGGATGCTTATGAGTCAAAGAATCAAGAACTGATGGCAGAGAATGCTGATTTAAGAGCATTATTGAGATCAATGCAG

upper sequence: AT2G18876.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 9
gtaaccaccatgacaatttagctttctcaggccttatatttcattgaatcaatgtgttactgacacatatggcgcaatatgatattttcagGTGGATGCATATGAGGCGAAAAATCAAGAACTGATGGCAGAGAACACTGATCTGAGAGCGTTACTACGATCAACGCAG
         |||| | | |   |  || |    ||| | ||   |  || ||    | | | ||  |  ||   | || |  |  |  ||||||||||| |||||||| ||||||||||| ||||||||||| || |||||| |||| || ||| |||| |||| ||||
-------gtatga-agtatgattggctta----ttagagtt---ttgattaacac-tgattaacttaagtgcgactatgtactgatggcagGTGGATGCCTATGAGGCAAAAAATCAAGAGCTGATGGCAGAAAATACTGATTTGAGGGCATTATTACGGTCAATGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttcattgaatcaatgtgttactgacacatatggcgcaatatgatattttcagGTGGATGCATATGAGGCGAAAAATCAAGAACTGATGGCAGAGAACACTGATCTGAGAGCGTTACTACGATCAACGCAG
                     tactgac  putative branch site (score: 1)
                                              tattttc  putative PPT
                                       aatatgatattttca  TA-rich tract