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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaaaatgaattgttcttgtgtatattttttgtgactatatcataaaatccatatgtttgctataataccttcttagGTACACGGTGCAATGGGAATCCGAGAATATTATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAA

Basic information

species Arabidopsis thaliana
transcript AT2G18100.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G18100.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA02G05680.1 (Glycine max), 3'ss of exon 7
--------gtattaaaa--tgaattgttcttgtgtatattttttgtgactata-----tcataaaatccatatgtttgctataataccttc-----ttagGTACACGGTGCAATGGGAATCCGAGAATATTATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAA
           ||||||  ||   |||| || | | |||  ||  ||   ||      |   ||||     |  |||   ||  |     |     |||||||  || |||| ||||| ||||||||| | ||||| ||||||||||||||||| ||||||||||||||||
ttatcttaactttaaaacctgtgatgttattatttttatgattgatggtgatgatccctgccaaaaaaatgacctttcacatggtcttgccaaaagttagGTATGCGCTGCAGTGGGAGTCCGAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAA

upper sequence: AT2G18100.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA16G24310.1 (Glycine max), 3'ss of exon 7
---------------gtattaaaatga-attgttcttgtgtatattttttgtgactatatcataaaat----ccatatgtttgctataataccttcttagGTACACGGTGCAATGGGAATCCGAGAATATTATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAA
                 ||    |||  ||| ||| | ||  |     |  |||      | |||||     || |   |||| | |        ||||||||  |  |||| ||||| ||| ||||| | ||||| ||||||||||||||||| ||||||||||||||||
ttatcttgactttagaaatcgtgatgttattattcatatgattgacggtgatgatccctgcctaaaaaatgacctttcatttggtcttgccaaaacttagGTATGCACTGCAGTGGGAGTCCAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAA

upper sequence: AT2G18100.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA01G37420.1 (Glycine max), 3'ss of exon 7
--------------gtattaaaatgaattgttcttgtgtatat---tttttgtgactatatcataaaatccatatgtt-tgctataatacctt--cttagGTACACGGTGCAATGGGAATCCGAGAATATTATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAA
                  || ||  |||||||       |      |  ||||| |  |   |   ||   | || |  |       | ||     |||||||  |  || | ||||| ||| ||||| |  ||||  |||||||||||||||||||||||||||||||||
aataagtgattgttactctagaagcaattgtttccaaagaagcgcataattgtggccttgctactcaaatgacatttcatatggccttgccaaaagttagGTATGCACTGAAGTGGGAGTCCAAGAATCTATTTGCCCTGAGCACTGCAATTCAGGATTGGCTTACTTCAA

upper sequence: AT2G18100.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA17G17160.1 (Glycine max), 3'ss of exon 5
--------gtattaaaa--tgaattgttcttgtgtatattttttgtgactata--------tcataaaat--ccatatgtttgctataataccttcttagGTACACGGTGCAATGGGAATCCGAGAATATTATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAA
           ||| ||  ||   |||| || |  ||||  ||  ||   ||          || |||||  || |   |||| | |         |||||||  |  |||| ||||| ||  ||||| | ||||| ||||||||||||||||| ||||||||||||||||
ttatcttgactttagaaactgtgatgttattattcatatgattgatggtaatgatccctgcccaaaaaatgacctttcatttggtcttgccaaaagttagGTATGCACTGCAGTGGGAGTCTAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAA

upper sequence: AT2G18100.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA11G07870.1 (Glycine max), 3'ss of exon 6
--------------gtattaaaatgaattgttcttgtgtatat---tttttgtgactatatcataaaatccatatgtttgctataataccttc-----ttagGTACACGGTGCAATGGGAATCCGAGAATATTATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAA
                  || ||  |||||||    |  |      |  || || |  |   |   ||   | ||  || ||||        |     |||||||  |  |||| ||||| ||| ||||| |  || |  |||||||||||||||||||||||||| ||||||
aataagggattattactctagaaacaattgtttgcatagaagcacataattatggccttgctactcaaatgacat--ttcctatggccttgccaaaagttagGTATGCACTGCAGTGGGAGTCCAAGAATCTATTTTCCCTGAGCACTGCAATTCAGGATTGGCTTTCTTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattttttgtgactatatcataaaatccatatgtttgctataataccttcttagGTACACGGTGCAATGGGAATCCGAGAATATTATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAA
                                            taccttctt  CT-rich tract
            actatatcataaaat  TA-rich tract