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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatattatatcctgtaaacacacatacacttgcaaacttaacttattccctaaccaaaaactaatgtttttctgatgatttctcagATTGTGAACTGCAGAGATGAGATTGCCCAATATTACCTAATAGACTGTATAATTCAAGTTTTTCCTGACGAGTATCACTTGCAGACTCTAGATGTACTTC

Basic information

species Arabidopsis thaliana
transcript AT2G17790.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G17790.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA11G08390.1 (Glycine max), 3'ss of exon 7
-gtaaaatattatatcctgtaaacacacatacacttgcaaacttaacttattccctaacca-----aaaactaatgtttttctgatgatttct-----cagATTGTGAACTGCAGAGATGAGATTGCCCAATATTACCTAATAGACTGTATAATTCAAGTTTTTCCTGACGAGTATCACTTGCAGACTCTAGATGTACTTC
    || |  | |||  | |  |     |  || |   | || |   | | |  |||||||     ||||   ||   |||      |||        ||| ||||||| |||| ||||||| | || || |  ||| | || || |||||||||||||| || ||||| |||||||||||||| ||||| |||||  |  
gtctaattgctttattgtttctatttctaatca-tcaaagacatggttaactttctaaccataaaaaaaaacgattccttttcctcaattatcatgggcagGTTGTGAATTGCAAAGATGAGTTAGCTCAGTTCTACTTGATGGATTGTATAATTCAAGTCTTCCCTGATGAGTATCACTTGCAAACTCTTGATGTTTTGT

upper sequence: AT2G17790.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA01G36870.1 (Glycine max), 3'ss of exon 7
-gtaaaatattatatcctgtaaacacacatacacttgcaaacttaacttattccctaaccaaaaactaatgtttt--tctgatgatttctca------gATTGTGAACTGCAGAGATGAGATTGCCCAATATTACCTAATAGACTGTATAATTCAAGTTTTTCCTGACGAGTATCACTTGCAGACTCTAGATGTACTTC
    || |  | |||  | |  |     |  || |   | |  |   | | |  ||||||| |||  |||| |||  | |  | | || |||      | ||||||| |||| ||||||| | || || | |||| | || || |||||||||||||| || || || |||||||||||||| ||||| |||||  |  
gtctaattgctttattgtttctatttctaatca-tcaaagatatggttaactttctaaccagaaaaaaatgatttgttttcctcaattatcatggacagGTTGTGAATTGCAAAGATGAGTTGGCTCAGTTTTACTTGATGGATTGTATAATTCAAGTCTTCCCCGATGAGTATCACTTGCAAACTCTTGATGTGTTGT

upper sequence: AT2G17790.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv04s0023g03870.t01 (Vitis vinifera), 3'ss of exon 7
----------------------------------------------gtaaaatattatatcctgtaaacacacatacacttgcaaacttaacttattccct---------aaccaaaaactaatgtttttctgatga--------tttctcagATTGTGAACTGCAGAGATGAGATTGCCCAATATTACCTAATAGACTGTATAATTCAAGTTTTTCCTGACGAGTATCACTTGCAGACTCTAGATGTACTTC
                                              |   | | |  | | ||      |    |    ||| |  | | |  | |  | |         ||| | ||  |||||        |||         |||   || |||| || || | ||||||||||||||||| |||  | || || || ||||||||||| |||||||| ||||| |||||||| ||||| ||   | |  
gtctgatctatttagttgtctctcaacagtttttttttttttttttggtcattttcgttttcttcttttatttgtcattttgaaggcgtgatatgtggcttttgcatgacaactataacataatggagcctacatggcattcgtctttgatagGTTGTCAATTGTAAAGATGAGATTGCCCAATTTTATTTGATGGATTGCATAATTCAAGTCTTTCCTGATGAGTACCACTTGCAAACTCTTGAGACATTAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163971041|gb|ES105835.1|ES105835
EST:     GTACAGAGATACAGTTCTTCCTAGAGTCTTAGAGCAG                         ATTGTGAACTGCAGAGATGAGATTGCCCAATATTACCTAATAGACTGTATA
genomic: GTACAGAGATACAGTTCTTCCTAGAGTCTTAGAGCAGgtaaaatatt ... gatttctcagATTGTGAACTGCAGAGATGAGATTGCCCAATATTACCTAATAGACTGTATA
EST: gi|116486083|gb|EG528675.1|EG528675
EST:     TGGACCTTGATATGTACAGAGATACAGTTCTTCCTAGAGTCTTAGAGCAG                         ATTGTGAACTGCAGAGATGAGATT
genomic: TGGACCTTGATATGTACAGAGATACAGTTCTTCCTAGAGTCTTAGAGCAGgtaaaatatt ... gatttctcagATTGTGAACTGCAGAGATGAGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaaacttaacttattccctaaccaaaaactaatgtttttctgatgatttctcagATTGTGAACTGCAGAGATGAGATTGCCCAATATTACCTAATAGACTGTATAATTCAAGTTTTTCCTGACGAGTATCACTTGCAGACTCTAGATGTACTTC
                                               tttctc  CT-rich tract
                        aaaaactaatgttttt  TA-rich tract