1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacactcaaacaccttagataaatccgttttctctcacaaatctgattccttatgactgaatcacttcttaaccaattcattgatatactccagGCGATACTGCTAACAAGATTGGGACTTACAGTCTCGCCTTGTGCGCAAAACATCACGGGATCCCATTTTATGTTGCTGCACCTCTTACCTCAGTTGATCT
species | Arabidopsis thaliana |
transcript | AT2G05830.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGTCGTGTTGATGGTGTCATCGTTGGAGCTGATCGTGTGGCTTCAAATG GCGATACTGCTAACAAGATTGGGACTTACAGEST: gi|116380081|gb|EG422673.1|EG422673
genomic: TGGTCGTGTTGATGGTGTCATCGTTGGAGCTGATCGTGTGGCTTCAAATGgtacactcaa ... tatactccagGCGATACTGCTAACAAGATTGGGACTTACAG
EST: TGGTCGTGTTGATGGTGTCATCGTTGAAGCTGATCGTGTGGCTTCAAATG GCGATACTGCTAACAAGATTGGGACTTACAGTCTCGCCTTGTGCGCAAAACEST: gi|86080100|gb|DR375857.1|DR375857
genomic: TGGTCGTGTTGATGGTGTCATCGTTGGAGCTGATCGTGTGGCTTCAAATGgtacactcaa ... tatactccagGCGATACTGCTAACAAGATTGGGACTTACAGTCTCGCCTTGTGCGCAAAAC
EST: TGGTCGTGTTGATGGTGTCATCGTTGGAGCTGATCGTGTGGCTTCAAATG GCGATACTGCTAACAAGATTGGGACTTACAGTCTCGCCTTGTGCGCAAAACEST: gi|116462299|gb|EG504891.1|EG504891
genomic: TGGTCGTGTTGATGGTGTCATCGTTGGAGCTGATCGTGTGGCTTCAAATGgtacactcaa ... tatactccagGCGATACTGCTAACAAGATTGGGACTTACAGTCTCGCCTTGTGCGCAAAAC
EST: TGGTCGTGTTGATGGTGTCATCGTTGGAGCTGATCGTGTGGCTTCAAATG GCGATACTGCTAACAAGATTGGGACTTACAGTCTCGCCTTGTGCGCAAAACEST: gi|125104254|gb|EL158386.1|EL158386
genomic: TGGTCGTGTTGATGGTGTCATCGTTGGAGCTGATCGTGTGGCTTCAAATGgtacactcaa ... tatactccagGCGATACTGCTAACAAGATTGGGACTTACAGTCTCGCCTTGTGCGCAAAAC
EST: ATGGTGTCATCGTTGGAGCTGATCGTGTGGCTTCAAATG GCGATACTGCTAACAAGATTGGGACTTACAGTCTCGCCTTGTGCGCAAAACEST: gi|116380079|gb|EG422671.1|EG422671
genomic: ATGGTGTCATCGTTGGAGCTGATCGTGTGGCTTCAAATGgtacactcaa ... tatactccagGCGATACTGCTAACAAGATTGGGACTTACAGTCTCGCCTTGTGCGCAAAAC
EST: TGGTCGTGTTGATGGTGTCATCGTTGGAGCTGATCGTGTGGCTTCAAATG GCGATACTGCTAACAAGATTGGGACTTACAGTCTCCCCTTGTGCGCAAAAC
genomic: TGGTCGTGTTGATGGTGTCATCGTTGGAGCTGATCGTGTGGCTTCAAATGgtacactcaa ... tatactccagGCGATACTGCTAACAAGATTGGGACTTACAGTCTCGCCTTGTGCGCAAAAC
aatctgattccttatgactgaatcacttcttaaccaattcattgatatactccagGCGATACTGCTAACAAGATTGGGACTTACAGTCTCGCCTTGTGCGCAAAACATCACGGGATCCCATTTTATGTTGCTGCACCTCTTACCTCAGTTGATCT
aattcattgatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacactcaaacaccttagataaatccgttttctctcacaaatctgattccttatgactgaatcacttcttaaccaattcattgatatactccagGCGATACTGCTAACAAGATTGGGACTTACAGTCTCGCCTTGTGCGCAAAACATCACGGGATCCCATTTTATGTTGCTGCACCTCTTACCTCAGTTGATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC