1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatcgctatatacatatatttagtttgtgctactatcttacttgggtcttggaagtaatcagtgaaagttcatggtgttaaatctgcagCTCTGGGGATTTGCACATGCGTCTCAATACCTCTCGTAATCTTGGAGATCCCTTACTTTGTCGAGAATCAAGATAACTCAATAGAAAGAAAAGCTTACTA
species | Arabidopsis thaliana |
transcript | AT2G05590.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGAACGAATGTTTGGCTAGCAGCACGGAGTTTGAGTTAAAGAATGTCGAG CTCTGGGGATTTGCACATGCGTCEST: gi|116400809|gb|EG443401.1|EG443401
genomic: GGAACGAATGTTTGGCTAGCAGCACGGAGTTTGAGTTAAAGAATGTCGAGgtatcgctat ... aaatctgcagCTCTGGGGATTTGCACATGCGTC
EST: GGAACGAATGTTTGGCTAGCAGCACGGAGTTTGAGTTAAAGAATGTCGAG CTCTGGGGATTTGCACATGCGTCTCAATACCTCTCGTAATCTTGGAGATCCEST: gi|125102829|gb|EL157452.1|EL157452
genomic: GGAACGAATGTTTGGCTAGCAGCACGGAGTTTGAGTTAAAGAATGTCGAGgtatcgctat ... aaatctgcagCTCTGGGGATTTGCACATGCGTCTCAATACCTCTCGTAATCTTGGAGATCC
EST: GGAACGAATGTTTGGCTAGCAGCACGGAGTTTGAGTTAAAGAATGTCGAG AEST: gi|125102829|gb|EL157452.1|EL157452
genomic: GGAACGAATGTTTGGCTAGCAGCACGGAGTTTGAGTTAAAGAATGTCGAGgtatcgctat ... aaatctgcag-
EST: GGAACGAATGTTTGGCTAGCAGCACGGAGTTTGAGTTAAAGAATGTCGAG AEST: gi|116400805|gb|EG443397.1|EG443397
genomic: GGAACGAATGTTTGGCTAGCAGCACGGAGTTTGAGTTAAAGAATGTCGAGgtatcgctat ... aaatctgcag-
EST: GGAACGAATGTTTGGCTAGCAGCACGGAGTTTGAGTTAAAGAATGTCGAG CTCTGGGGATTTGCACATGCGTCTCAATACCTCTCGTAATCTTGGAGATCC
genomic: GGAACGAATGTTTGGCTAGCAGCACGGAGTTTGAGTTAAAGAATGTCGAGgtatcgctat ... aaatctgcagCTCTGGGGATTTGCACATGCGTCTCAATACCTCTCGTAATCTTGGAGATCC
atcttacttgggtcttggaagtaatcagtgaaagttcatggtgttaaatctgcagCTCTGGGGATTTGCACATGCGTCTCAATACCTCTCGTAATCTTGGAGATCCCTTACTTTGTCGAGAATCAAGATAACTCAATAGAAAGAAAAGCTTACTA
atcttac putative branch site (score: 3)
tgttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcgctatatacatatatttagtttgtgctactatcttacttgggtcttggaagtaatcagtgaaagttcatggtgttaaatctgcagCTCTGGGGATTTGCACATGCGTCTCAATACCTCTCGTAATCTTGGAGATCCCTTACTTTGTCGAGAATCAAGATAACTCAATAGAAAGAAAAGCTTACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA