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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttggtaaaattaaagagccctaaccaaagacttagattaatggctgtaaacatgattcaatcaaataaaaaccgttttttgtttttgggcagAATCGGATATGCGAATCAAGCAGGAGACATACCGCTCGATTGGGCTTTAGGTGCATTCATTCAACAGACTGCAACAGAGACCTCTCAACATGCAGCCTCT

Basic information

species Arabidopsis thaliana
transcript AT2G02970.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124788717|gb|EH878396.1|EH878396
EST:     ATTGTGTCATTGCTTCACGATACCCTTGGCATTCCTCTTGATGATGAAAG                         AATCGGATATGCGAATCAAG
genomic: ATTGTGTCATTGCTTCACGATACCCTTGGCATTCCTCTTGATGATGAAAGgtatgttggt ... ttttgggcagAATCGGATATGCGAATCAAG
EST: gi|164145218|gb|ES104342.1|ES104342
EST:     TTGTGTCATTGCTTCACGATACCCTTGGCATTCCTCTTGATGATGAAAG                         AATCGGATATGCGAATCAAGCAGGAGACATACCGCTCGATTGGG
genomic: TTGTGTCATTGCTTCACGATACCCTTGGCATTCCTCTTGATGATGAAAGgtatgttggt ... ttttgggcagAATCGGATATGCGAATCAAGCAGGAGACATACCGCTCGATTGGG
EST: gi|163985402|gb|ES138723.1|ES138723
EST:     TTGCTTCACGATACCCTTGGCATTCCTCTTGATGATGAAAG                         AATCGGATATGCGAATCAAGCAGGAGACATACCGCTCGATTG
genomic: TTGCTTCACGATACCCTTGGCATTCCTCTTGATGATGAAAGgtatgttggt ... ttttgggcagAATCGGATATGCGAATCAAGCAGGAGACATACCGCTCGATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatggctgtaaacatgattcaatcaaataaaaaccgttttttgtttttgggcagAATCGGATATGCGAATCAAGCAGGAGACATACCGCTCGATTGGGCTTTAGGTGCATTCATTCAACAGACTGCAACAGAGACCTCTCAACATGCAGCCTCT
 gattaat  putative branch site (score: 3)
                                  ccgttttttgttttt  putative PPT
                 attcaatcaaataaaa  TA-rich tract