Sequence
atgc intronic sequence ATGC exonic sequencegtttgttagatacggaattcatatggctctttgttctcttggtggggattctgagacgggttttggttgtgcagGTAGGGTTCTTCACAGGGAGGAAGAAAGAGAGTATATTTAAATCACCTGAGGATCCATTTGGAAAAGTGGGTGTGACTGGAAGTGGGAAAGGTTTGACAG
Basic information
species | Arabidopsis thaliana |
transcript | AT2G02570.4 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G02570.3 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA17G00560.2 (Glycine max), 3'ss of exon 8
-------------------------gtttgttagatacggaattca-tatggctctttgttctcttggtggggattctgagacgggttttggttgtgcagGTAGGGTTCTTCACAGGGAGGAAGAAAGAGAGTATATTTAAATCACCTGAGGATCCATTTGGAAAAGTGGGTGTGACTGGAAGTGGGAAAGGTTTGACAG
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ttttgcatacaacttatttgctcacaatgcttaaatagagtttggaacaatgatcttttttgtcctgatattatgcaatactttggctttgcatgcacagATTGGTTTCTTCTCTGGAAGAAAACGGGAGAGTATTTTTAAATCTCCTGATGATCCTCAGGGAAAGGTTGGTGTGACGGGAAGTGGGAAAGGTTTGACAG
upper sequence: AT2G02570.3 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA07G40240.1 (Glycine max), 3'ss of exon 7
-----------------------gtttgttagatacggaattcatatggctctttgttctcttggtg-gggattctgagacgggttttggttg--tgcagGTAGGGTTCTTCACAGGGAGGAAGAAAGAGAGTATATTTAAATCACCTGAGGATCCATTTGGAAAAGTGGGTGTGACTGGAAGTGGGAAAGGTTTGACAG
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gtgtttttgtatacaacttagttgcttacaatgcttaaactgagtttgtaacgatgatcttttgttctgatatcatgcaatactttggctttgcttacagATTGGTTTCTTCTCTGGAAGAAAACGGGAGAGTATTTTTAAATCTCCTGATGATCCTCAGGGAAAGGTTGGTGTGACGGGAAGTGGGAAAGGTTTGACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86083979|gb|DR379738.1|DR379738EST: AACAGAATGATTGGCAACAGTTTCAGACGACTAAAGCCAAAACTAAAAAG GTAGGGTTCTTCACAGGGAGGAAGAAAGAGAGTATATTCAAATCRCCAGAG
genomic: AACAGAATGATTGGCAACAGTTTCAGACGACTAAAGCCAAAACTAAAAAGgtttgttaga ... ggttgtgcagGTAGGGTTCTTCACAGGGAGGAAGAAAGAGAGTATATTTAAATCACCTGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgttagatacggaattcatatggctctttgttctcttggtggggattctgagacgggttttggttgtgcagGTAGGGTTCTTCACAGGGAGGAAGAAAGAGAGTATATTTAAATCACCTGAGGATCCATTTGGAAAAGTGGGTGTGACTGGAAGTGGGAAAGGTTTGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG