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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctttcctatgctattaaattggaattctaatcttaggttcaataaaattggtatgaacaatgtagacgataacatgtctgttctgaaatttgactgcagGCACTTGAAAGTTTCTTGCTACGATGTCCCAGGGACATCTCACCATATTGTGATGAAATTTTAAATCTTACTTTAGAATATATTAGTTATGACCCGAATT

Basic information

species Arabidopsis thaliana
transcript AT2G02560.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02560.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 3'ss of exon 8
-----------------tctttcctatgctattaaattggaattctaatcttaggttcaataaaattggtatga-acaatgtagacgataacatgtc---tgttctgaaatttgactgcagGCACTTGAAAGTTTCTTGCTACGATGTCCCAGGGACATCTCACCATATTGTGATGAAATTTTAAATCTTACTTTAGAATATATTAGTTATGACCCGAATT
                 | || | |  | |||| | || ||  | || | |    | ||       || ||||  | |||  |     | | ||||    | | |  |||||| | ||||||| || || ||||| || ||  | || ||| |||| || ||  ||||||||||||||||| |  |||||||  |||||||| ||||||||||||| || |
gtattgtgtatatgaaattttactttagatatttattttgatgtttagtttaccttgcaccctttatgttatggtaaaattgacttcttcatatgttacatatgcgtaaattttaatgcagGCCCTGGAGAGTTTTTTACTCAGGTGCCCCCGGGATATTTCTTCATATTGTGATGAAATTCTTCATCTTACCCTAGAATATCTTAGTTATGACCCAAACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125272059|gb|EL286144.1|EL286144
EST:     GCACTAGCGCTTCAGAAAACGACGAGGAGCTTCGCGAGTATAGCTTACAG                         GCACTTGAAAGTTTCTTGCTACGATGTCCCAGGGACAT
genomic: GCACTAGCGCTTCAGAAAATGACGAGGAGCTTCGCGAGTATAGCTTACAGgtatcgtgca ... ttgactgcagGCACTTGAAAGTTTCTTGCTACGATGTCCCAGGGACAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattggtatgaacaatgtagacgataacatgtctgttctgaaatttgactgcagGCACTTGAAAGTTTCTTGCTACGATGTCCCAGGGACATCTCACCATATTGTGATGAAATTTTAAATCTTACTTTAGAATATATTAGTTATGACCCGAATT
                                       tgaaattt  TA-rich tract