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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtccccttctctctttctgtgtatctctcttttgtgtgttgggattgctgattgatgagatgaaactggcagTCACTGGGGAGCATAGTGGCGTTCCAAGCAATGGTGTCGATCGCAACGATTGGACTGTACATAGCATACGCAATCCCGATTATATTGAGAGTGACGCTTG

Basic information

species Arabidopsis thaliana
transcript AT2G01170.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G01170.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: LOC_Os01g42234.2 (Oryza sativa), 3'ss of exon 7
-----------------------------------------------------gtaagtccccttctctctttctgtgtatctctcttttgtg-tgttgggattgctgattgatgagatgaaactg--------gcagTCACTGGGGAGCATAGTGGCGTTCCAAGCAATGGTGTCGATCGCAACGATTGGACTGTACATAGCATACGCAATCCCGATTATATTGAGAGTGACGCTTG
                                                       |  |   |   |   ||  ||   |    |||    |  || |   |      |   |  | |  |||||         |||||| ||||||||| | ||||||||||| || |||||||||||||| ||||| || |||||| | || |||||  | |||||  | || || |||||||| |
gtaagttcctgacaatcttgttcacatctcagaaagtttcagaaaacgcaacgaaacattgacaaattgattcttgctcaaaattctcaaatactgataataacaacaac-aacaaaaaaaaactatgggaaatgcagTCGCTGGGGAGCTTGGTGGCGTTCCAGGCGATGGTGTCGATCGCGACGATCGGGCTGTACGTGGCGTACGCGCTGCCGATCCTGTTCAGGGTGACGCTGG

upper sequence: AT2G01170.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA20G25660.1 (Glycine max), 3'ss of exon 7
-----------------gtaagtccccttctctctttctg--tgtatc-tctcttttgtgtgttgggattgctgattgatgagatgaaactg----gcagTCACTGGGGAGCATAGTGGCGTTCCAAGCAATGGTGTCGATCGCAACGATTGGACTGTACATAGCATACGCAATCCCGATTATATTGAGAGTGACGCTTG
                  | | |    |    |  | |    | |||  | |||||    | |||  | | |||||   | |  |  ||||     |||||| ||||| ||||||||||| ||| ||||||||||||| || ||   |||||  ||||| || || || ||  | || ||||| || || || ||  | |
taaattttactatattattgaattttttaaagtgctgcaaattttattatttctttccattcttgtcacttctgataattcaattccaactctactgcagTCTCTGGGAAGCATAGTGGCATTCGAAGCAATGGTGTCTATAGCGGTGATTGTCCTGTATATTGCCTATGCCCTACCAATTATCTTTAGGGTAACCTTGG

upper sequence: AT2G01170.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: PP1S47_191V6.1 (Physcomitrella patens), 3'ss of exon 7
----------------------------------------------------------------------------gtaagtccccttctctctttctgtgtatctctcttttgtgtgttgggattgctgattgatgagatgaaactggcagTCACTGGGGAGCATAGTGGCGTTCCAAGCAATGGTGTCGATCGCAACGATTGGACTGTACATAGCATACGCAATCCCGATTATATTGAGAGTGACGCTTG
                                                                            || ||  |   |   |  |    ||| ||    || ||     | |  | |  |   | ||| |||     | ||||| ||||||||| | |||||||||||||| ||||||||||| ||||| ||||| ||||||||  | |||||  | || ||  | ||  | || ||  | |
gtgagaccagactctaaaaccaccatattctctcgttgtgttgcattgcgtttgcgttgcattgccactgcatctggtgag--cttgtgattggtgtgatgtgtcgtctttctgacccattgattcggggcccgttgaaatgggggagccagTCGCTGGGGAGCCTGGTGGCGTTCCAAGCCATGGTGTCGATTGCAACAATTGGGCTGTACATCTCCTACGCGCTGCCCATCCTTTTCCGCGTCACCATAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080462|gb|DR376219.1|DR376219
EST:     TTAATGCGGTTTGGCTCTCTGCTCTCATATCATTTTGTATGGCCCTCACC                         TCACTGGGGAGCATAGTGGCGTTCCAAGCAATGGTGTCGATCGCAACGATT
genomic: TTAATGCGGTTTGGCTCTCTGCTCTCATATCATTTTGTATGGCCCTCACCgtaagtcccc ... aaactggcagTCACTGGGGAGCATAGTGGCGTTCCAAGCAATGGTGTCGATCGCAACGATT
EST: gi|86082258|gb|DR378017.1|DR378017
EST:     GTTTGGCTCTCTGCTCTCATATCATTTTGTATGGCCCTCACC                         TCACTGGGGAGCATAGTGGCGTTCCAAGCAATGGTGTCGATCGCAACGATT
genomic: GTTTGGCTCTCTGCTCTCATATCATTTTGTATGGCCCTCACCgtaagtcccc ... aaactggcagTCACTGGGGAGCATAGTGGCGTTCCAAGCAATGGTGTCGATCGCAACGATT