1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tattgcaagcgcttaataactgaggagcaatctggttatatttcttatctctgtgtttgttctcatttacccttgcttccatttttctattgatccttagGTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAGGATGAACATAACAAGAAATATAAGAAAAATAATAAAAGAAAAACCCAGG
species | Arabidopsis thaliana |
transcript | AT1G79150.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGATCATGTCAAAGCTCACAACTGCCAACTTCATCCTAATGCTATCGAG GTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAGEST: gi|116393370|gb|EG435962.1|EG435962
genomic: CTGATCATGTCAAAGCTCACAACTGCCAACTTCATCCTAATGCTATCGAGgtattcattg ... tgatccttagGTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAG
EST: CTGATCATGTCAAAGCTCACAACTGCCAACTTCATCCTAATGCTATCGAG GTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAGEST: gi|116393385|gb|EG435977.1|EG435977
genomic: CTGATCATGTCAAAGCTCACAACTGCCAACTTCATCCTAATGCTATCGAGgtattcattg ... tgatccttagGTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAG
EST: CTGATCATGTCAAAGCTCACAACTGCCAACTTCATCCTAATGCTATCGAG GTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAGEST: gi|116393389|gb|EG435981.1|EG435981
genomic: CTGATCATGTCAAAGCTCACAACTGCCAACTTCATCCTAATGCTATCGAGgtattcattg ... tgatccttagGTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAG
EST: CTGATCATGTCAAAGCTCACAACTGCCAACTTCATCCTAATGCTATCGAG GTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAGEST: gi|116381024|gb|EG423616.1|EG423616
genomic: CTGATCATGTCAAAGCTCACAACTGCCAACTTCATCCTAATGCTATCGAGgtattcattg ... tgatccttagGTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAG
EST: CTGATCATGTCAAAGCTCACAACTCCCAACTTCATCCTAATGCTATCGAG GTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAGEST: gi|116393383|gb|EG435975.1|EG435975
genomic: CTGATCATGTCAAAGCTCACAACTGCCAACTTCATCCTAATGCTATCGAGgtattcattg ... tgatccttagGTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAG
EST: CTGATCATGTCAAAGCTCACAACTGCCAACTTCATCCTAATGCTATCGAG GTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAGEST: gi|116393380|gb|EG435972.1|EG435972
genomic: CTGATCATGTCAAAGCTCACAACTGCCAACTTCATCCTAATGCTATCGAGgtattcattg ... tgatccttagGTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAG
EST: CTGATCATGTCAAAGCCCACAACTGCCAACTTCATCCTAATGCTATCGAG GTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAGEST: gi|116393373|gb|EG435965.1|EG435965
genomic: CTGATCATGTCAAAGCTCACAACTGCCAACTTCATCCTAATGCTATCGAGgtattcattg ... tgatccttagGTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAG
EST: CTGATCATGTCAAAGCTCACAACTGCCAACTTCATCCTAATGCTATCGAG GTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAGEST: gi|116393392|gb|EG435984.1|EG435984
genomic: CTGATCATGTCAAAGCTCACAACTGCCAACTTCATCCTAATGCTATCGAGgtattcattg ... tgatccttagGTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAG
EST: CTGATCATGTCAAAGCTCACAACTGCCAACTTCATCCTAATGCTATCGAG GTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAGEST: gi|116393391|gb|EG435983.1|EG435983
genomic: CTGATCATGTCAAAGCTCACAACTGCCAACTTCATCCTAATGCTATCGAGgtattcattg ... tgatccttagGTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAG
EST: CTGATCATGTCAAAGCTCACAACTGCCAACTTCATCCTAATGCTATCGAG GTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAGEST: gi|116393388|gb|EG435980.1|EG435980
genomic: CTGATCATGTCAAAGCTCACAACTGCCAACTTCATCCTAATGCTATCGAGgtattcattg ... tgatccttagGTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAG
EST: CTGATCATGTCAAAGCTCACAACTGCCAACTTCATCCTAATGCTATCGAG GTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAG
genomic: CTGATCATGTCAAAGCTCACAACTGCCAACTTCATCCTAATGCTATCGAGgtattcattg ... tgatccttagGTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAG
tatctctgtgtttgttctcatttacccttgcttccatttttctattgatccttagGTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAGGATGAACATAACAAGAAATATAAGAAAAATAATAAAAGAAAAACCCAGG
tattgat putative branch site (score: 3)
cccttgcttccatttt CT-rich tract
atttttctattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattgcaagcgcttaataactgaggagcaatctggttatatttcttatctctgtgtttgttctcatttacccttgcttccatttttctattgatccttagGTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAGGATGAACATAACAAGAAATATAAGAAAAATAATAAAAGAAAAACCCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - atctctg