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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatctcattacacggcctgagactattttgtgattatgaataattgctacgctctaatcactttctctgttctcttcctttatctttagGGATATTGCCGTGTACATTATTGATACCAGGTCTCTTTTTCATCCCCGAATCCCCTCGCTGGCTG

Basic information

species Arabidopsis thaliana
transcript AT1G75220.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059936|gb|DR355693.1|DR355693
EST:     GGCGTATTTACTTGGCCTCTTTGTTCCATGGAGAATTCTTGCAGTTCTGG                         GGATATTGCCGTGTACATAATTGATACCAGGTCTCTTTTTCATCCCCGAAT
genomic: GGCGTATTTACTTGGCCTCTTTGTTCCATGGAGAATTCTTGCAGTTCTGGgtaaaatctc ... ttatctttagGGATATTGCCGTGTACATTATTGATACCAGGTCTCTTTTTCATCCCCGAAT
EST: gi|125243117|gb|EL257202.1|EL257202
EST:     TCCATGGAGAATTCTTGCAGTTCTGG                         GGATATTGCCGTGTACATTATTGATACCAGGTCTCTTTTTCATCCCCGAAT
genomic: TCCATGGAGAATTCTTGCAGTTCTGGgtaaaatctc ... ttatctttagGGATATTGCCGTGTACATTATTGATACCAGGTCTCTTTTTCATCCCCGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgaataattgctacgctctaatcactttctctgttctcttcctttatctttagGGATATTGCCGTGTACATTATTGATACCAGGTCTCTTTTTCATCCCCGAATCCCCTCGCTGGCTG
                 ctctaat  putative branch site (score: 3)
                 ctctaatcactttctc  CT-rich tract
                                            tttatcttta  TA-rich tract