Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtctgtttattacgttttcatctactagtgtgctgttgtgttcgtcaatagcagctcagaactttatttcctctttcttttgaagAGTCCAAAAAATATAAGGCTGCCATCATCCGAATTGACAGTCCAGGAGGTGATGCTCTCGCTTCTGATTT

Basic information

species Arabidopsis thaliana
transcript AT1G73990.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73990.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA04G31180.1 (Glycine max), 3'ss of exon 7
-gtag-gtctgtttattacgttttcatctactagtgtgctgttgtgttcgtcaatagca--gctcagaactttatttcc----------tctttcttttgaagAGTCCAAAAAATATAAGGCTGCCATCATCCGAATTGACAGTCCAGGAGGTGATGCTCTCGCTTCTGATTT
  ||| |||  |  |||| | |    | | | |      ||     || | || |   |    |||  | |||| ||||          |  ||       ||| || ||||||| ||||||||| |||||| ||||||||||||| |||||||||||||| |||||||||||
tttagtgtccatcaattatgct---gtttgccaaaaaaatgcaacctttgacagtgttattattcattattttaattccctcatcagtgttctttcccctcagAATCAAAAAAATTTAAGGCTGCTATCATCAGAATTGACAGTCCTGGAGGTGATGCTCTTGCTTCTGATTT

upper sequence: AT1G73990.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA17G09020.1 (Glycine max), 3'ss of exon 7
--gtaggtctgtttattacgttttcatctactagtgt-----gctgttgtgttcgt-caatagcagctcaga--actttatttcctctttcttttga-agAGTCCAAAAAATATAAGGCTGCCATCATCCGAATTGACAGTCCAGGAGGTGATGCTCTCGCTTCTGATTT
    |    | ||    | ||| | ||    || | |     | | || | || ||   |||       ||   || ||    | ||||| | |    |||||| || ||||| |||||||| || ||||||||||||||||||||||| |||||||| |||||||||||
cctgaaactttttggcaatgttattatgctttattatttttggttattatatttgtgtcataattttggaggtcacattgagccttctttttctcctcagAGTCAAATAAATACAAGGCTGCTATTATCCGAATTGACAGTCCAGGAGGGGATGCTCTTGCTTCTGATTT

upper sequence: AT1G73990.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA06G22870.1 (Glycine max), 3'ss of exon 8
---------gtaggtctgtttat-tacgttttcatctactagtgtgctgttgtgt-tcgtcaatagcagctcagaactt-tatttcctctttcttttgaagAGTCCAAAAAATATAAGGCTGCCATCATCCGAATTGACAGTCCAGGAGGTGATGCTCTCGCTTCTGATTT
          |     |||||   ||  |    | ||   |  |||   || |   |  |    |    ||||  |||   |  |  ||||||   | | ||||| ||| |||  |||||||| |||||| ||||||||||||| |||||||||||||| |||||||||||
tgcctatcaatgatgttgtttgcctaaatcgcaacctttgacagtgtcattattcattattttaattcactcacgactcacaagtgttctttcccctca-gAGTCAAAAGAATTCAAGGCTGCTATCATCAGAATTGACAGTCCTGGAGGTGATGCTCTTGCTTCTGATTT

upper sequence: AT1G73990.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA05G07540.1 (Glycine max), 3'ss of exon 8
gtaggtctgtttattacgttttcatctactagtgtgctgttgtgttcgtcaatagcagctcagaactttatttcctctttcttttgaagAGTCCAAAAAATATAAGGCTGCCATCATCCGAATTGACAGTCCAGGAGGTGATGCTCTCGCTTCTGATTT----
                             || | |  |  |||  |  |   | | || ||| |  |     | || |||||  | | ||||| || ||||| | |||||| || ||| ||||||||||||||||||| |||||||| |||||||||||    
---------------------------gttattatatttgtgtcataatt--ttggaggtcaca-ttgagccttctttttctcctca-gAGTCAAATAAATACAGGGCTGCTATTATCTGAATTGACAGTCCAGGAGGGGATGCTCTTGCTTCTGATTTGCAA

upper sequence: AT1G73990.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv17s0000g04690.t01 (Vitis vinifera), 3'ss of exon 3
-----gtaggtctgtttattacgttttcatctacta-gtgtgct-gttgtgttcgtcaatagcagctcagaact----ttatttcctctttcttttgaagAGTCCAAAAAATATAAGGCTGCCATCATCCGAATTGACAGTCCAGGAGGTGATGCTCTCGCTTCTGATTT
      |   | ||   |  |  |||| |  | | | | |||||  ||   |   | |      |||   | ||     |    | | |||  |||  ||| || |||| |||||||||||  ||||| || |||||||| || |||||||||||||| |||||||||||
ttcttttgcatatggaaaacaaattttgacttccaatgagtgcttattacatgatttaggtcttgctttaagctaatgctgggcctttttttctttccagATTCAAAAAGATATAAGGCTGTTATCATTCGCATTGACAGCCCTGGAGGTGATGCTCTTGCTTCTGATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctgttgtgttcgtcaatagcagctcagaactttatttcctctttcttttgaagAGTCCAAAAAATATAAGGCTGCCATCATCCGAATTGACAGTCCAGGAGGTGATGCTCTCGCTTCTGATTT
                               ctttatttcctctttc  CT-rich tract
                             aactttattt  TA-rich tract