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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcttaactctgttacaaggtcttaagtaaatactaatagacatgccggcacatccatcatgcgttgttttctatctctttgatcagATCCTTGCAGTTTCTTGCTCTCCCAAGTTTCTTTGTGGGCACAATACTCTGGGCTGCCTTGTTTCTTCAGTTCTGGAAACGTAAAAATGCGGCCTTGTTA

Basic information

species Arabidopsis thaliana
transcript AT1G73020.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116423752|gb|EG466344.1|EG466344
EST:     TTGATATTTCCAGCCTTACTTGGGTTTATAGTGCAGATGGTTGATTTTGG                         ATCCTTGCAGTTTCTTGCTCTCCCAAGTTTCTTTGTGGGCACAATA
genomic: TTGATATTTCCAGCCTTACTTGGGTTTATAGTGCAGATGGTTGATTTTGGgtaagttctt ... ctttgatcagATCCTTGCAGTTTCTTGCTCTCCCAAGTTTCTTTGTGGGCACAATA
EST: gi|116423940|gb|EG466532.1|EG466532
EST:     AGATGGTTGATTTTGG                         ATCCTTGCAGTTTCTTGCTCTCCCAAGTTTCTTTGTGGGCACAATACTCTG
genomic: AGATGGTTGATTTTGGgtaagttctt ... ctttgatcagATCCTTGCAGTTTCTTGCTCTCCCAAGTTTCTTTGTGGGCACAATACTCTG
EST: gi|116435864|gb|EG478456.1|EG478456
EST:     TTGATATTTCCAGCCTTACTTGGGTTTATAGTGCAGATGGTTGATTTTGG                         ATCCTTGCAGTTTCTTGCTCTCCCAAGTTTCTTTGTGGGCACAATACTCTG
genomic: TTGATATTTCCAGCCTTACTTGGGTTTATAGTGCAGATGGTTGATTTTGGgtaagttctt ... ctttgatcagATCCTTGCAGTTTCTTGCTCTCCCAAGTTTCTTTGTGGGCACAATACTCTG
EST: gi|116436397|gb|EG478989.1|EG478989
EST:     TTGATATTTCCAGCCTTACTTGGGTTTATAGTGCAGATGGTTGATTTTGG                         ATCCTTGCAGTTTCTTGCTCTCCCAAGTTTCTTTGTGGGCACAATACTCCG
genomic: TTGATATTTCCAGCCTTACTTGGGTTTATAGTGCAGATGGTTGATTTTGGgtaagttctt ... ctttgatcagATCCTTGCAGTTTCTTGCTCTCCCAAGTTTCTTTGTGGGCACAATACTCTG
EST: gi|116436360|gb|EG478952.1|EG478952
EST:     TTGATATTTCCAGCCTTACTTGGGTTTATAGTGCAGATGGTTGATTTTGG                         ATCCTTGCAGTTTCTTGCTCTCCCAAGTTTCTTTGTGGGCACAATACTCTG
genomic: TTGATATTTCCAGCCTTACTTGGGTTTATAGTGCAGATGGTTGATTTTGGgtaagttctt ... ctttgatcagATCCTTGCAGTTTCTTGCTCTCCCAAGTTTCTTTGTGGGCACAATACTCTG
EST: gi|116423947|gb|EG466539.1|EG466539
EST:     GTTGATTTTGG                         ATCCTTGCAGTTTCTTGCTCTCCCAAGTTTCTTTGTGGGCACAATACTCTG
genomic: GTTGATTTTGGgtaagttctt ... ctttgatcagATCCTTGCAGTTTCTTGCTCTCCCAAGTTTCTTTGTGGGCACAATACTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actaatagacatgccggcacatccatcatgcgttgttttctatctctttgatcagATCCTTGCAGTTTCTTGCTCTCCCAAGTTTCTTTGTGGGCACAATACTCTGGGCTGCCTTGTTTCTTCAGTTCTGGAAACGTAAAAATGCGGCCTTGTTA
 tactaat  putative branch site (score: 1)
                                ttgttttctatctctt  putative PPT
                                   ttttctat  TA-rich tract