1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gcaagtctcgtacttctacaaagcaactagtgttaaaaggggttttgctgtaacttgttaactcaagtgtgacatctttcttcttcagGTTCCTCTTACTCGCTACTTACCAACATGGAAAGGAAACGTGATAGATGCAGAAATGGAGATGAATCCAGGTCATGTTGTTGGTATGTCTCTATCCGTTA
species | Arabidopsis thaliana |
transcript | AT1G72420.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CATGGCAGGCTTTTGTTTTTGCTCCAAAGGGAAACTGGTATACAGCTAAG GTTCCTCTTACTCGCTACTTACCAACATGGAAAGGAAACGTGATAGATGCAEST: gi|116420282|gb|EG462874.1|EG462874
genomic: CATGGCAGGCTTTTGTTTTTGCTCCAAAGGGAAACTGGTATACAGCTAAGgcaagtctcg ... tcttcttcagGTTCCTCTTACTCGCTACTTACCAACATGGAAAGGAAACGTGATAGATGCA
EST: CATGGCAGGCTTTTGTTTTTGCTCCAAAGGGAAACTGGTATACAGCTAAG GTTCCTCTTACTCGCTACTTACCAACATGGAAAGGAAACGTGATAGATGCAEST: gi|152038463|gb|AV823677.2|AV823677
genomic: CATGGCAGGCTTTTGTTTTTGCTCCAAAGGGAAACTGGTATACAGCTAAGgcaagtctcg ... tcttcttcagGTTCCTCTTACTCGCTACTTACCAACATGGAAAGGAAACGTGATAGATGCA
EST: CATGGCAGGCTTTTGTTTTTGCTCCAAAGGGAAACTGGTATACAGCTAAG GTTCCTCTTACTCGCTACTTACCAACATGGAAAGGAAACGTGATAGATGCA
genomic: CATGGCAGGCTTTTGTTTTTGCTCCAAAGGGAAACTGGTATACAGCTAAGgcaagtctcg ... tcttcttcagGTTCCTCTTACTCGCTACTTACCAACATGGAAAGGAAACGTGATAGATGCA
taaaaggggttttgctgtaacttgttaactcaagtgtgacatctttcttcttcagGTTCCTCTTACTCGCTACTTACCAACATGGAAAGGAAACGTGATAGATGCAGAAATGGAGATGAATCCAGGTCATGTTGTTGGTATGTCTCTATCCGTTA
tgttaac putative branch site (score: 2)
catctttcttcttc putative PPT
ttgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtctcgtacttctacaaagcaactagtgttaaaaggggttttgctgtaacttgttaactcaagtgtgacatctttcttcttcagGTTCCTCTTACTCGCTACTTACCAACATGGAAAGGAAACGTGATAGATGCAGAAATGGAGATGAATCCAGGTCATGTTGTTGGTATGTCTCTATCCGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG