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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattgtctgatgacgcttttgacgatcataaattttattttcaccgatgctgtgattttcatgatggtagctagattcggttggttttattcatagtcacgtttgacttacttaactcatacctgataatgcagTTCTTTCCTTTCAATGACGACTTGAATTTGAGGCAACCTGAAACTAAGGCAATTATGACTTGGCTGAGAGATATACGATTCACAGCGTCGGCTACTCTGC

Basic information

species Arabidopsis thaliana
transcript AT1G71696.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71696.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA20G31000.1 (Glycine max), 3'ss of exon 7
gtgattgtctgatgacgcttttgacgatcataaattttattttcaccgatgctgtgattttcatgatggtagctagattcggttggttttattcatagtcacgtttgacttacttaactcatacctgataatgcagTTCTTTCCTTTCAATGACGACTTGAATTTGAGGCAACCTGAAACTAAGGCAATTATGACTTGGCTGAGAGATATACGATTCACAGCGTCGGCTACTCTGC
                                | |   |  ||    |||    || | ||| | ||  | |||    |   ||| |     ||||    ||  |  || ||||||  ||  |  ||| |   |||||| ||  ||| ||||| ||   | |||   ||||||||||||| |  ||||| |||| |||| |||||||||||||||||||||| || || ||| |||
--------------------------------agtgacaccttg---gatatcatgttattcgttataattgcttctatttcttgctagagatcatctgaacact-aacctacttatgtctcaaatgaaacaacagTTCATTTTTTTTAATGATGATGAGGATTCCCGGCAACCTGAAACAAGAGCAATAATGAATTGGTTGAGAGATATACGATTCACAGCATCTGCCACTTTGC

upper sequence: AT1G71696.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA10G36590.1 (Glycine max), 3'ss of exon 7
gtgattgtctgatgacgcttttgacgatcataaattttattttcaccgatgctgtgattttcatgatggtagctagattcggttggttttattcatagtcacgtttgacttact-taactcatacctgataatgcagTTCTTTCCTTTCAATGACGACTTGAATTTGAGGCAACCTGAAACTAAGGCAATTATGACTTGGCTGAGAGATATACGATTCACAGCGTCGGCTACTCTGC
                               || |   | |||           || || | || |  |  ||||  |   | | |   |  || |   |||   | ||  ||| |   ||| |    ||||  |||||  ||  | | ||||| ||   | |||   ||||||||||||| |  || || |||| |||| |||||||||||||||||||||| || || ||| |||
-------------------------------aagtgacactttgtatatcatgttgtttgttataaatgctgctatttcttgctagagatcatc-tgaacac---taaccaactatgtttcaaatgaaataa--cagTTTGTTTTTATAAATGATGATGAGGATTCCCGGCAACCTGAAACAAGAGCGATAATGAATTGGTTGAGAGATATACGATTCACAGCATCTGCCACTTTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttggttttattcatagtcacgtttgacttacttaactcatacctgataatgcagTTCTTTCCTTTCAATGACGACTTGAATTTGAGGCAACCTGAAACTAAGGCAATTATGACTTGGCTGAGAGATATACGATTCACAGCGTCGGCTACTCTGC
     ttttattcata  TA-rich tract