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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataataactatctttgctctgtttacttatgttcttgagaaatggcttatcaataaatgtgttatcttgtgcagGAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGAGCTGAGGTGGTGAAGAACACACTTGCAATAAGAGGAGGTCACTACAATT

Basic information

species Arabidopsis thaliana
transcript AT1G70410.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124733775|gb|EH825177.1|EH825177
EST:     AGGAACATAAAGACTTGAGCTACGATGATCAATGCAACAAGTGTGAGAAG                         GAAGCTGTGAACGTATCGCTTGGAAACTTG
genomic: AGGAACATAAAGACTTGAGCTACGATGATCAATGCAACAAGTGTGAGAAGgtaataataa ... tcttgtgcagGAAGCTGTGAACGTATCGCTTGGAAACTTG
EST: gi|124891570|gb|EH970472.1|EH970472
EST:     CGATGATCAATGCAACAAGTGTGAGAAG                         GAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGA
genomic: CGATGATCAATGCAACAAGTGTGAGAAGgtaataataa ... tcttgtgcagGAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGA
EST: gi|152037774|gb|BP796793.2|BP796793
EST:     AGGAACATAAAGACTTGAGCTACGATGATCAATGCAACAAGTGTGAGAAG                         GAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGA
genomic: AGGAACATAAAGACTTGAGCTACGATGATCAATGCAACAAGTGTGAGAAGgtaataataa ... tcttgtgcagGAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGA
EST: gi|86080525|gb|DR376282.1|DR376282
EST:     AGGAACATAAAGACTTGAGCTACGATGATCAATGCAACAAGTGTGAGAAG                         GAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGA
genomic: AGGAACATAAAGACTTGAGCTACGATGATCAATGCAACAAGTGTGAGAAGgtaataataa ... tcttgtgcagGAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGA
EST: gi|86080573|gb|DR376330.1|DR376330
EST:     AGGAACATAAAGACTTGAGCTACGATGATCAATGCAACAAGTGTGAGAAG                         GAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGA
genomic: AGGAACATAAAGACTTGAGCTACGATGATCAATGCAACAAGTGTGAGAAGgtaataataa ... tcttgtgcagGAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGA
EST: gi|125217545|gb|EL231628.1|EL231628
EST:     CGATGATCAATGCAACAAGTGTGAGAAG                         GAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTAGTGAGA
genomic: CGATGATCAATGCAACAAGTGTGAGAAGgtaataataa ... tcttgtgcagGAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGA
EST: gi|125310958|gb|EL325043.1|EL325043
EST:     AGGAACATAAAGACTTGAGCTACGATGATCAATGCAACAAGTGTGAGAAG                         GAAGCTGTGAACGTATCGCTTGGAAACT
genomic: AGGAACATAAAGACTTGAGCTACGATGATCAATGCAACAAGTGTGAGAAGgtaataataa ... tcttgtgcagGAAGCTGTGAACGTATCGCTTGGAAACT
EST: gi|125116484|gb|EL166011.1|EL166011
EST:     GGAACATAAAGACTTGAGCTAACGATGATCAATGCAACAAGTGTGAGAAG                         GAAGCTGTGAACGTA
genomic: GGAACATAAAGACTTGAGCTA-CGATGATCAATGCAACAAGTGTGAGAAGgtaataataa ... tcttgtgcagGAAGCTGTGAACGTA
EST: gi|124824526|gb|EH909392.1|EH909392
EST:     CGATGATCAATGCAACAAGTGTGAGAAG                         GAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGA
genomic: CGATGATCAATGCAACAAGTGTGAGAAGgtaataataa ... tcttgtgcagGAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGA
EST: gi|124842059|gb|EH926496.1|EH926496
EST:     AACAAGTGTGAGAAG                         GAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGA
genomic: AACAAGTGTGAGAAGgtaataataa ... tcttgtgcagGAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGA
EST: gi|125222590|gb|EL236675.1|EL236675
EST:     GACTTGAGCTACGATGATCAATGCAACAAGTGTGAGAAG                         GAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGA
genomic: GACTTGAGCTACGATGATCAATGCAACAAGTGTGAGAAGgtaataataa ... tcttgtgcagGAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGA
EST: gi|124815935|gb|EH900801.1|EH900801
EST:     CAAGTGTGAGAAG                         GAAGCTGTGAACGTATCGCTTAGGAAACTTGCTTTCGTACCCATTCGTGAG
genomic: CAAGTGTGAGAAGgtaataataa ... tcttgtgcagGAAGCTGTGAACGTATCGCTT-GGAAACTTGCTTTCGTACCCATTCGTGAG
EST: gi|86078926|gb|DR374683.1|DR374683
EST:     AGGAACATAAAGACTTGAGCTACGATGATCAATGCAACAAGTGTGAGAAG                         GAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGA
genomic: AGGAACATAAAGACTTGAGCTACGATGATCAATGCAACAAGTGTGAGAAGgtaataataa ... tcttgtgcagGAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGA
EST: gi|124806429|gb|EH893264.1|EH893264
EST:     GCAACAAGTGTGAGAAG                         GAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGA
genomic: GCAACAAGTGTGAGAAGgtaataataa ... tcttgtgcagGAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGA
EST: gi|125145428|gb|EL180625.1|EL180625
EST:     TAAAGACTTGAGCTACGATGATCAATGCAACAAGTGTGAGAAG                         GAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGA
genomic: TAAAGACTTGAGCTACGATGATCAATGCAACAAGTGTGAGAAGgtaataataa ... tcttgtgcagGAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGA
EST: gi|152034513|gb|BP830524.2|BP830524
EST:     AGGAACATAAAGACTTGAGCTACGATGATCAATGCAAAAAGTGTGAGAAG                         GAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGA
genomic: AGGAACATAAAGACTTGAGCTACGATGATCAATGCAACAAGTGTGAGAAGgtaataataa ... tcttgtgcagGAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttacttatgttcttgagaaatggcttatcaataaatgtgttatcttgtgcagGAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGAGCTGAGGTGGTGAAGAACACACTTGCAATAAGAGGAGGTCACTACAATT
                                          ttatctt  CT-rich tract
                           ttatcaataaatgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaataataactatctttgctctgtttacttatgttcttgagaaatggcttatcaataaatgtgttatcttgtgcagGAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGAGCTGAGGTGGTGAAGAACACACTTGCAATAAGAGGAGGTCACTACAATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG