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...catgtagaaatgctggcaatgtatataccataacttcttatatttgaggggtgcagaagcaatgccgaccattgctaaaaatttgactctctaaatgtagATTACTTCCACTTTACTTTCCTCGAGATGAACATGAGGAAGAGGTTGCCATATCAAAGCTCCCGGCTGATGTTGGAGATGAAAATGGTGAGACGGTTATA
species | Arabidopsis thaliana |
transcript | AT1G69340.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCCGTTGTTTTCTGTACCACCACATCCTCTGATACGGAGATATACAAACG ATTACTTCCACTTTACTTTCCTCGAGATGAACATGAGGAAGAGGTTGCCATEST: gi|116484633|gb|EG527225.1|EG527225
genomic: GCCGTTGTTTTCTGTACCACCACATCCTCTGATACGGAGATATACAAACGgtatcttaat ... ctaaatgtagATTACTTCCACTTTACTTTCCTCGAGATGAACATGAGGAAGAGGTTGCCAT
EST: GCCGTTGTTTTCTGTACCACCACATCCTCTGATACGGAGATATACAAACG ATTACTTCCACTTTACTTTCCTCGAGATGAACATGAGGAAGAGGTTGCCATEST: gi|124986396|gb|EL058920.1|EL058920
genomic: GCCGTTGTTTTCTGTACCACCACATCCTCTGATACGGAGATATACAAACGgtatcttaat ... ctaaatgtagATTACTTCCACTTTACTTTCCTCGAGATGAACATGAGGAAGAGGTTGCCAT
EST: CGTTGTTTTCTGTACCTTACCACATCCTCTGATACGGAGATATACAAACG ATTACTTCCACTTTACTTTCCTCGAGATGAACATGAGGAAGAGGEST: gi|164206915|gb|ES053861.1|ES053861
genomic: CGTTGTTTTCTGTACC--ACCACATCCTCTGATACGGAGATATACAAACGgtatcttaat ... ctaaatgtagATTACTTCCACTTTACTTTCCTCGAGATGAACATGAGGAAGAGG
EST: GCCGTTGTTTTCNGTACCACCACATCCTCTGATACGGAGATATACAAACG ATTACTTCCACTTTACCTTCCTCGAGATGAACATGAGGAAGAGGTTGCCATEST: gi|116483396|gb|EG525988.1|EG525988
genomic: GCCGTTGTTTTCTGTACCACCACATCCTCTGATACGGAGATATACAAACGgtatcttaat ... ctaaatgtagATTACTTCCACTTTACTTTCCTCGAGATGAACATGAGGAAGAGGTTGCCAT
EST: GCCGTTGTTTTCTGTACCACCACATCCTCTGATACGGAGATATACAAACG ATTACTTCCACTTTACTTTCCTCGAGATGAACATGAGGAAGAGGTTGCCAT
genomic: GCCGTTGTTTTCTGTACCACCACATCCTCTGATACGGAGATATACAAACGgtatcttaat ... ctaaatgtagATTACTTCCACTTTACTTTCCTCGAGATGAACATGAGGAAGAGGTTGCCAT
gaggggtgcagaagcaatgccgaccattgctaaaaatttgactctctaaatgtagATTACTTCCACTTTACTTTCCTCGAGATGAACATGAGGAAGAGGTTGCCATATCAAAGCTCCCGGCTGATGTTGGAGATGAAAATGGTGAGACGGTTATA
ctctct CT-rich tract
attgctaaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgtagaaatgctggcaatgtatataccataacttcttatatttgaggggtgcagaagcaatgccgaccattgctaaaaatttgactctctaaatgtagATTACTTCCACTTTACTTTCCTCGAGATGAACATGAGGAAGAGGTTGCCATATCAAAGCTCCCGGCTGATGTTGGAGATGAAAATGGTGAGACGGTTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- -gtagaaa
- - - - - - - - - - - - - accataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaaaaa