1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaactacaaataccagtttcttgtttcccgtttaaaagtgtttgagtttctgatattcaaactctgtcattccagGCTGCCAAGAACACGCCCTTCATGCTTGCAGACCGTAAGCTTCGTGTAAAGGAAAAAGAAG
species | Arabidopsis thaliana |
transcript | AT1G69250.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTCCTTTGAAACTGTTGCCTCAGTCCAGAGCGTGCTTCAG GCTGCCAAGAACACGCCCTTCATGCTTGCAGACCGTAAGCTTCGTGTAAAAEST: gi|86088195|gb|DR383954.1|DR383954
genomic: CTCCTTTGAAACTGTTGCCTCAGTCCAGAGCGTGCTTCAGgtaaactaca ... gtcattccagGCTGCCAAGAACACGCCCTTCATGCTTGCAGACCGTAAGCTTCGTGTAAA-
EST: TCGGGTTTATCTCCTTTGAAACTGTTGCCTCAGTCCAGAGCGTGCTTCAG GCTGCCAAGAACACGCCCTTCATGCTTGCAGACCGTAAGCTTCGTGTAAAG
genomic: TCGGGTTTATCTCCTTTGAAACTGTTGCCTCAGTCCAGAGCGTGCTTCAGgtaaactaca ... gtcattccagGCTGCCAAGAACACGCCCTTCATGCTTGCAGACCGTAAGCTTCGTGTAAAG
ttgtttcccgtttaaaagtgtttgagtttctgatattcaaactctgtcattccagGCTGCCAAGAACACGCCCTTCATGCTTGCAGACCGTAAGCTTCGTGTAAAGGAAAAAGAAG
ttctgat putative branch site (score: 3)
ctctgtc putative PPT
tttaaaagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaactacaaataccagtttcttgtttcccgtttaaaagtgtttgagtttctgatattcaaactctgtcattccagGCTGCCAAGAACACGCCCTTCATGCTTGCAGACCGTAAGCTTCGTGTAAAGGAAAAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG