1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtattagcggtgtggaaattgaacaattccgagctcagaatctgattttgttggtgattatttgtgtaaaatagGAAACAAATGGATGGGAGGGTGATTTGCAAAATGTGATCCACATTAACTATGGAGCTGGTGATGTCACACCTGACCCTCAAGCAGCAGCTACAG
species | Arabidopsis thaliana |
transcript | AT1G68920.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGACCATTACCTCTCCATTGTTTCCTATGAATGGTGGATTCAAGCGACAG GAAACAAATGGATGGGAGGGTGATTTGCAAAATGTGATCCACATTAACTATEST: gi|164119415|gb|ES088019.1|ES088019
genomic: GGACCATTACCTCTCCATTGTCTCCTATGAATGGTGGATTCAAGCGACAGgtatgtatta ... tgtaaaatagGAAACAAATGGATGGGAGGGTGATTTGCAAAATGTGATCCACATTAACTAT
EST: ACCATTACCTCTCCATTGTCTCCTATGAATGGTGGATTCAAAGACGACAG GAAACAAATGGATGGGAGGGTGATEST: gi|116476258|gb|EG518850.1|EG518850
genomic: ACCATTACCTCTCCATTGTCTCCTATGAATGGTGGATTCAA-G-CGACAGgtatgtatta ... tgtaaaatagGAAACAAATGGATGGGAGGGTGAT
EST: GGACCATTACCTCTCCATTGTCTCCTATGAATGGTGGATTCAAGCGACAG GAAACAAATGGATGGGAGGGTGATTTGCAAAATGTGATCCACATTAACTAT
genomic: GGACCATTACCTCTCCATTGTCTCCTATGAATGGTGGATTCAAGCGACAGgtatgtatta ... tgtaaaatagGAAACAAATGGATGGGAGGGTGATTTGCAAAATGTGATCCACATTAACTAT
tgaacaattccgagctcagaatctgattttgttggtgattatttgtgtaaaatagGAAACAAATGGATGGGAGGGTGATTTGCAAAATGTGATCCACATTAACTATGGAGCTGGTGATGTCACACCTGACCCTCAAGCAGCAGCTACAG
atctgat putative branch site (score: 4)
attatttgtgtaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtattagcggtgtggaaattgaacaattccgagctcagaatctgattttgttggtgattatttgtgtaaaatagGAAACAAATGGATGGGAGGGTGATTTGCAAAATGTGATCCACATTAACTATGGAGCTGGTGATGTCACACCTGACCCTCAAGCAGCAGCTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT