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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgatatcttgatgattccactccgccattattctgtactttatgtatgatgcatataattttggtgaaaatagtatgctgataactctttttattttcctctctagGCAGGTGCTGTTCTTGGTAAAAGTTTGCAGCCTTACGAGTCTCATATTCCCTTTATTCTCCAGTTTCTG

Basic information

species Arabidopsis thaliana
transcript AT1G67500.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G67500.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA03G39720.1 (Glycine max), 3'ss of exon 6
--------------------------gtacgatatcttgatgattccac-tccgccattattctgta------ctttat---gtatgatgcatataattttggtga-aaatagtatgctgataactctttttattttcctctctagGCAGGTGCTGTTCTTGGTAAAAGTTTGCAGCCTTACGAGTCTCATATTCCCTTTATTCTCCAGTTTCTG
                           ||    | ||||||  ||  || || |  || | | |||       ||||||    |    | ||| | | |||| ||  | |  | ||  |  |   ||||   |||| | | |  |||| ||||||||||||| ||||||||| |||||||| || || ||||||||||||||||| |||||||||
gtacaatttctggacattacttatacttagctaagcttgattcttgtacctcagttatcactttgtggaaagtctttattgaattaagtacatcttagtttgatgttacactgaataatctttcatcttgacatttcctttttcagGCTGGTGCTGTTCTTGATAAAAGTTTACAGCCTTATGAATCACATATTCCCTTTATTCTTCAGTTTCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catataattttggtgaaaatagtatgctgataactctttttattttcctctctagGCAGGTGCTGTTCTTGGTAAAAGTTTGCAGCCTTACGAGTCTCATATTCCCTTTATTCTCCAGTTTCTG
                           tgataac  putative branch site (score: 2)
                              taactctttttatttt  CT-rich tract
                             ataactctttttattt  TA-rich tract