Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgctagaagagttaggccttttcccattctagaacatgtcagctgtaaagctggcctttattttatagtgatagtcaacttgatatattctgttgtgttcttttacagATTCAACTCGCGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACTTCTCATTCAGAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCC

Basic information

species Arabidopsis thaliana
transcript AT1G67325.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G67325.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA11G36990.3 (Glycine max), 3'ss of exon 6
gtatgtgctagaagagttaggccttttcccattctagaacatgtcagctgtaaagctggcctttattttatagtgatagtcaacttgatatattctgttgtgttcttttacagATTCAACTCGCGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACTTCTCATTCAGAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCC
          | | || |  |   ||||    |   |   || |  | |  ||   |||   ||  | || | | ||       |||  ||   || ||        |  ||||| ||||||| || ||||| ||||||||||| || ||||| ||||| || || |||||||||||||| || |||||||| ||||||||||| || || ||
----------gtacaggtgtgttatttctagcttatgtctatttttgttcaaa---tggaagttgatgtagatttatt-----tttgtcatcccctatt------cctagcagATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTTTCATTCAGAACTGTCTGCAACATGAGAAAGTGCAACACACCCAAACC

upper sequence: AT1G67325.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA11G36990.1 (Glycine max), 3'ss of exon 6
gtatgtgctagaagagttaggccttttcccattctagaacatgtcagctgtaaagctggcctttattttat--agtgatagtcaactt-gatatattct-gttgtgttctttt----acagATTCAACTCGCGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACTTCTCATTCAGAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCC
                                         ||| |  | ||      | || | |||  |  | ||  |||  |  | ||| |||| | ||  |   || ||     ||||| ||||||| || ||||| ||||||||||| || ||||| ||||| || || |||||||||||||| || |||||||| ||||||||||| || || ||
--------------------------------------gtgtgttatttctagcttatgtctatttttgttcaaatggaagttgatgtagatttatttttgtcatcccctattcctagcagATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTTTCATTCAGAACTGTCTGCAACATGAGAAAGTGCAACACACCCAAACC

upper sequence: AT1G67325.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA18G00920.1 (Glycine max), 3'ss of exon 6
gtatgtgctagaagagttaggccttttcccattctagaacatgtcagctgtaaagctggcctttattttatagtgatagtcaacttgatatattctgttgtgttcttttacagATTCAACTCGCGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACTTCTCATTCAGAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCC
          | | || |  |   ||||   ||   |    | |  | |  ||||   |      |  |  |||  || |   ||    ||   || ||| |       | |||| |||| || || ||||| ||||||||||| || ||||| ||||| || || |||||||||||| | || |||||||| ||||||||||| || || ||
----------gtacaggtttgttatttctagtttacgtctgtttttgttcaaaaggaagt-----tgatgcagttttatttttctc---atcccctattgcga------atagATGCAACACGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTTTCATTCAGAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACC

upper sequence: AT1G67325.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv01s0010g03700.t01 (Vitis vinifera), 3'ss of exon 6
gtatgtgctagaagagttaggccttttcccattctagaacatgtcagctgtaaagctggcctttattttatagtgatagtcaacttgatatattctgttgtgttcttttacagATTCAACTCGCGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACTTCTCATTCAGAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCC
    |||| ||    || |  ||||| |  ||| || ||  ||| |||     |  |||| |       |      ||  |    || |  || || ||   |   | |  |||| |||| || |||||||| ||||| ||||| || ||||| ||||| |||||||| || |||||||| |||||||||||||||||||| || ||||| ||
----gtgc-aggcttgtcacacctttgct-attttataaattgtgagccaattatttggcatcatggcaaattctttatcctgactgtttcatcctttta-atgaatctctagATGCAACCCGTGATAATGACTGGACCTGTCCTAAATGTGGAAATGTCAACTTCTCTTTTAGAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAACC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116475626|gb|EG518218.1|EG518218
EST:     ATGCCAAGACCAAGGTTTTACCCAGATGAAAAATCACAAAAGAGAG                         ATTCAACTCGCGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACT
genomic: ATGCCAAGACCAAGGTTTTACCCAGATGAAAAATCACAAAAGAGAGgtatgtgcta ... tcttttacagATTCAACTCGCGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACT
EST: gi|116485681|gb|EG528273.1|EG528273
EST:     ATGCCAAGACCAAGGTTTTACCCAGATGAAAAATCACAAAAGAGAG                         ATTCAACTCGCGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACT
genomic: ATGCCAAGACCAAGGTTTTACCCAGATGAAAAATCACAAAAGAGAGgtatgtgcta ... tcttttacagATTCAACTCGCGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACT
EST: gi|116485680|gb|EG528272.1|EG528272
EST:     ATGCCAAGACCAAGGTTTTACCCAGATGAAAAATCACAAAAGAGAG                         ATTCAACTCGCGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACT
genomic: ATGCCAAGACCAAGGTTTTACCCAGATGAAAAATCACAAAAGAGAGgtatgtgcta ... tcttttacagATTCAACTCGCGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACT
EST: gi|116475625|gb|EG518217.1|EG518217
EST:     ATGCCAAGACCAAGGTTTTACCCAGATGAAAAATCACAAAAGAGAG                         ATTCAACTCGCGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACT
genomic: ATGCCAAGACCAAGGTTTTACCCAGATGAAAAATCACAAAAGAGAGgtatgtgcta ... tcttttacagATTCAACTCGCGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcctttattttatagtgatagtcaacttgatatattctgttgtgttcttttacagATTCAACTCGCGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACTTCTCATTCAGAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCC
                        acttgat  putative branch site (score: 5)
                                          tgttctttt  putative PPT
     tattttatagtgata  TA-rich tract