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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatcaatatccttcctgaaaaactctcatccagttgtcaaacactaggtcatgaacttgatgtacagattttatgaatatgattacgtgaatgtattgtaacacaaagaaggggcttgtaaatgcagTGCCCTCATGATGGAAAGTGTCCGCTGGAAAACACTGGAAAGTACTGTCATTTTGTTCAGCGGTTGCAGAGAACTTCGTCTCAGCGTTCCTACAAG

Basic information

species Arabidopsis thaliana
transcript AT1G64600.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G64600.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv02s0025g02200.t01 (Vitis vinifera), 3'ss of exon 8
gtaagtatcaatatccttcctgaaaaactctcatccagttgtcaaacactaggtcatgaacttgatgtacagattttatgaatatgattacgtgaatgtattgtaacacaaagaaggggcttgtaaatgcagTGCCCTCATGATGGAAAGTGTCCGCTGGAAAACACTGGAAAGTACTGTCATTTTGTTCAGCGGTTGCAGAGAACTTCGTCTCAGCGTTCCTACAAG
                                           ||     | ||  |     | ||  |     |||  || ||  ||   |    | |    |    |  | ||  |   |||   ||||||| ||||||||||||   ||||| ||||| || |||||||| || ||||||||||||||||| |||||||| ||  | || |||||  | ||||||
-----------------------------------------gtaagtttgatgtttt---tctaatcaatttccttttggattaccatgttgcacctcttccttgtttctga-aatagctctgttgttgcagTGTCCTCATGATGGACCTTGTCCACTGGAGAAAACTGGAAAATATTGTCATTTTGTTCAGCGCTTGCAGAGGACGACATCACAGCGAGCATACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaatatgattacgtgaatgtattgtaacacaaagaaggggcttgtaaatgcagTGCCCTCATGATGGAAAGTGTCCGCTGGAAAACACTGGAAAGTACTGTCATTTTGTTCAGCGGTTGCAGAGAACTTCGTCTCAGCGTTCCTACAAG
                       ttgtaac  putative branch site (score: 2)
     tatgatta  TA-rich tract