Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatatgcttcttttgtcgacatgagaatctatgagtttctatggaacagagacttgattctgttaattatttgtgcagCTTCTGGTCCAGTGGCTATAGTTCAGAAGATAACTAGTTCATGGGTCTCAAAGGGAAGGACTTACTACAGATACTCAACAACTGTGATTAACAAATCTTC

Basic information

species Arabidopsis thaliana
transcript AT1G64390.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47829907|gb|CK119591.1|CK119591
EST:     CCGAAGACCAATGCCTATTCGTAGACCGAAAGTGACTACTCCAGTCCGAG                         CTTCTGGTCCAGTGGCTATAGTTCAGAAGATAACTAGTTCATGGGTCTCAA
genomic: CCGAAGACCAATGCCTATTCGTAGACCGAAAGTGACTACTCCAGTCCGAGgtatatatgc ... atttgtgcagCTTCTGGTCCAGTGGCTATAGTTCAGAAGATAACTAGTTCATGGGTCTCAA
EST: gi|116445057|gb|EG487649.1|EG487649
EST:     CCGAAGACCAATGCCTATTCGTAGACCGAAAGTGACTACTCCAGTCCGAG                         CTTCTGGTCCAGTGGCTATAGTTCAGAAGATAACTAGTTCATGGGTCTCAA
genomic: CCGAAGACCAATGCCTATTCGTAGACCGAAAGTGACTACTCCAGTCCGAGgtatatatgc ... atttgtgcagCTTCTGGTCCAGTGGCTATAGTTCAGAAGATAACTAGTTCATGGGTCTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaatctatgagtttctatggaacagagacttgattctgttaattatttgtgcagCTTCTGGTCCAGTGGCTATAGTTCAGAAGATAACTAGTTCATGGGTCTCAAAGGGAAGGACTTACTACAGATACTCAACAACTGTGATTAACAAATCTTC
                                     tgttaat  putative branch site (score: 3)
                                 attctgttaattattt  TA-rich tract