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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcgtgtctctctcctctctcggttcttctcctatactcttgtagaaaaacggcaatgagccaaactgattgagaagagtataatttacagGTTGTACAAATATGCCTCCATGGGTTTTACTGTTCTTGGTGTGTTCCTAATTACGAAGCATGTCATTGACTCTGTTCTAGAGAGAAGACGGCGGAGACAG

Basic information

species Arabidopsis thaliana
transcript AT1G63900.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124710291|gb|EH801693.1|EH801693
EST:     TCTTCTAAATCAATCGATCAGCTCGTTTCTAATTTGGGAAAATGGTCAAG                         GTTGTACAAATATGCCTCC
genomic: TCTTCTAAATCACTCGATCAGCTCATTTCTAATTTGGGAAAATGGTCAAGgtcgtgtctc ... taatttacagGTTGTACAAATATGCCTCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcttgtagaaaaacggcaatgagccaaactgattgagaagagtataatttacagGTTGTACAAATATGCCTCCATGGGTTTTACTGTTCTTGGTGTGTTCCTAATTACGAAGCATGTCATTGACTCTGTTCTAGAGAGAAGACGGCGGAGACAG
                           aactgat  putative branch site (score: 3)
                                      aagagtataattta  TA-rich tract