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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaagcttggttccttttaacgcgtatttcctttaatgcacatcttggaggatgtcatggactgttctttttgcagATGGTTCCAACGTGCTGCAGATACTTATGTAAAAGTCCCTTTCCTTGGACCTATCTCTTACCTCACTCTTGCAGTTTCTCCTTTCTGCATTGTCTTTGCT

Basic information

species Arabidopsis thaliana
transcript AT1G63690.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164062896|gb|ES028741.1|ES028741
EST:     GGTGTTGAGGGTTTGCAAACTTGCCTCGTCGCGTTACTATCAAG                         ATGGTTCCAACGTTGCTGCAGATACTTATGTAAAAGTCCCTTTCCTTGGAC
genomic: GGTGTTGAGGGTTTGCAAACTTGCCTCGTCGCGTTACTATCAAGgtaaaagctt ... ctttttgcagATGGTTCCAACGT-GCTGCAGATACTTATGTAAAAGTCCCTTTCCTTGGAC
EST: gi|164230056|gb|EL989827.1|EL989827
EST:     GGTTTGCAAACTTGCCTCGTCGCGTTACTATCAAG                         ATGGTTCCAACGTGCTGCAG
genomic: GGTTTGCAAACTTGCCTCGTCGCGTTACTATCAAGgtaaaagctt ... ctttttgcagATGGTTCCAACGTGCTGCAG
EST: gi|125305861|gb|EL319946.1|EL319946
EST:     GGTTTGCAAACTTGCCTCGTCGCGTTACTATCAAG                         ATGGTTCCAACGTGCTGCAGATACTTATGTA
genomic: GGTTTGCAAACTTGCCTCGTCGCGTTACTATCAAGgtaaaagctt ... ctttttgcagATGGTTCCAACGTGCTGCAGATACTTATGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgtatttcctttaatgcacatcttggaggatgtcatggactgttctttttgcagATGGTTCCAACGTGCTGCAGATACTTATGTAAAAGTCCCTTTCCTTGGACCTATCTCTTACCTCACTCTTGCAGTTTCTCCTTTCTGCATTGTCTTTGCT
         ctttaat  putative branch site (score: 4)
                                        ctgttcttttt  putative PPT
                                           ttcttttt  TA-rich tract