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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtacattctcaagttttttacttaccatttcaagaataaggcttaattcaattcttgatcaatcttgcgtgtgcagCAAGTTAATGAAATCATTGATCCAAGGTTTTCTTCCCGGTATTGTCTTGAAGCTCTTTTTGATATTCCTGCCAACAATATTGATGATCATGTCGAAATTC

Basic information

species Arabidopsis thaliana
transcript AT1G62320.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G62320.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA13G10490.1 (Glycine max), 3'ss of exon 8
gtaggtacattctca-------agttttttacttaccatttcaagaataaggcttaattcaattc--ttgatcaatcttgcgtgtgcagCAAGTTAATGAAATCATTGATCCAAGGTTTTCTTCCCGGTATTGTCTTGAAGCTCTTTTTGATATTCCTGCCAACAATATTGATGATCATGTCGAAATTC
||| |   | |||||       |  | |  |  ||  ||||||     |   ||  |    | ||  |  | ||   ||   | ||||||   || || || ||||| || ||||||||||| ||||||||||| |||||||| ||  | || ||| ||||||||||||||||||||||||| ||||| 
gtaagcctaatctcatgattggaactctcaagatataatttcacttgcatcactggagattactcattcaaacatatttcattctgcagCCCTTTCATTAAGTCATTCATTCAAGGTTTTCTGCCCGGTATTGTGTTGAAGCTATTCCTCATCTTCTTGCCAACAATATTGATGATCATGTCTAAATTT

upper sequence: AT1G62320.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA07G39320.1 (Glycine max), 3'ss of exon 8
--------------gtaggtacattctcaagttttttacttaccatttcaagaataaggcttaattcaattcttgatcaatcttgcgtgtgcagCAAGTTAATGAAATCATTGATCCAAGGTTTTCTTCCCGGTATTGTCTTGAAGCTCTTTTTGATATTCCTGCCAACAATATTGATGATCATGTCGAAATTC
               ||| |  |      | | | | | |  |     || | ||         ||   |  ||||     |||   |||||||    || || || || || || ||||||||||| ||||||||||  |||||||| ||| | || ||| ||||||||||||||||||||||||| ||||| 
gtaagtctcatctcatagctgtacctctgaatatataattc-catccccatgcatccctggaggttacttatttgaatttactttattgtgcagTCCTTTCATTAAGTCGTTCATTCAAGGTTTTCTACCCGGTATTGCATTGAAGCTTTTTCTCATCTTCTTGCCAACAATATTGATGATCATGTCAAAATTT

upper sequence: AT1G62320.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA20G16230.2 (Glycine max), 3'ss of exon 3
gtaggtacattctca-------agttttttacttaccatttcaagaataaggcttaattcaattcttgatcaatcttgcgtg-tgcagCAAGTTAATGAAATCATTGATCCAAGGTTTTCTTCCCGGTATTGTCTTGAAGCTCTTTTTGATATTCCTGCCAACAATATTGATGATCATGTCGAAATTC
||| |     |||||       |  | |  |  ||  ||||||     |   ||  |   | |  || |   || || | |  ||||||   || || || || || || ||||||||||| ||||||||||| |||||||| ||  | || ||| ||||||||||||||||||||||||| ||||| 
gtaagcctgatctcatgattggaactctcaagatataatttcatttgcatcactggagatactcattcaaacatatttcattctgcagCCCTTTCATTAAGTCCTTCATTCAAGGTTTTCTGCCCGGTATTGTGTTGAAGCTATTCCTCATCTTCTTGCCAACAATATTGATGATCATGTCTAAATTT

upper sequence: AT1G62320.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA17G01400.1 (Glycine max), 3'ss of exon 7
--------------gtaggtacattctcaagttttttacttaccatttcaagaataaggcttaattcaattcttgatcaatcttgcgtgtgcagCAAGTTAATGAAATCATTGATCCAAGGTTTTCTTCCCGGTATTGTCTTGAAGCTCTTTTTGATATTCCTGCCAACAATATTGATGATCATGTCGAAATTC
               ||| |  |      | | | | | |  |     || | ||        |||   |  ||||     |||   |||||||    || || || ||||| || ||||||||||| || |||||||  |||||||| ||| | || ||  ||||||||||||||||||||||||| ||||| 
gtaagtttcatctcatagttgtacctctgaatatataattc-catccccatgcatccctggagattacttatttgaatttactttattgtgcagTCCTTTCATTAAGTCATTCATTCAAGGTTTTCTACCGGGTATTGCATTGAAGCTTTTTCTCATCTTTTTGCCAACAATATTGATGATCATGTCAAAATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaccatttcaagaataaggcttaattcaattcttgatcaatcttgcgtgtgcagCAAGTTAATGAAATCATTGATCCAAGGTTTTCTTCCCGGTATTGTCTTGAAGCTCTTTTTGATATTCCTGCCAACAATATTGATGATCATGTCGAAATTC
                     ttaattcaattctt  TA-rich tract