1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcacaaacagttatcaaaatctcccattcagttcatctatttctaaccccctgatttttcggattcactttttgcatcccaatcttgatggtctcttcagATGCGTGGCTTGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACATGGAACCTATCAGCAAAAAAAGCTGAAGCTAAATCTTGGCATCCTCTCA
species | Arabidopsis thaliana |
transcript | AT1G62305.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGCGACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACA GTGCGTGGCTTGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACAEST: gi|116385363|gb|EG427955.1|EG427955
genomic: GGCGACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACAgtaagcacaa ... gtctcttcagATGCGTGGCTTGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACA
EST: GGCGACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACA GTGCGTGGCTTGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACAEST: gi|116385379|gb|EG427971.1|EG427971
genomic: GGCGACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACAgtaagcacaa ... gtctcttcagATGCGTGGCTTGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACA
EST: GGCGACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACA GTGCGTGGCTTGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACAEST: gi|116385383|gb|EG427975.1|EG427975
genomic: GGCGACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACAgtaagcacaa ... gtctcttcagATGCGTGGCTTGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACA
EST: GGCGACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACA ATGCGTGGCTTGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACAEST: gi|116385604|gb|EG428196.1|EG428196
genomic: GGCGACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACAgtaagcacaa ... gtctcttcagATGCGTGGCTTGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACA
EST: GGCGACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACA GTGCGTGGCTTGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACA
genomic: GGCGACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACAgtaagcacaa ... gtctcttcagATGCGTGGCTTGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACA
accccctgatttttcggattcactttttgcatcccaatcttgatggtctcttcagATGCGTGGCTTGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACATGGAACCTATCAGCAAAAAAAGCTGAAGCTAAATCTTGGCATCCTCTCA
tctcttc CT-rich tract
tgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcacaaacagttatcaaaatctcccattcagttcatctatttctaaccccctgatttttcggattcactttttgcatcccaatcttgatggtctcttcagATGCGTGGCTTGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACATGGAACCTATCAGCAAAAAAAGCTGAAGCTAAATCTTGGCATCCTCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC