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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtttcacatctcacggatttcacaaaaagaactctttaaaggttctttcgaaatctgaaatgtgtattttctttttatctttcagGTCTCCACGATGAAGGAGTGACACGTTTGGTGATCTTTGTCTTGTCTATGCTTCTTGTGATGCTTCTGTCATAGTACCAGAACTAAGCCGGATCCAGTCT

Basic information

species Arabidopsis thaliana
transcript AT1G61900.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163993548|gb|ES082274.1|ES082274
EST:     AATTCCTGCTCTTCCAGCTGCTGCCTCCTCGCAACCTC                         GTCTCCACGATGAAGGAGTGAAACGTTTGGTGATCTTTGTCTTGTCTATGC
genomic: AATTCCTGCTCTTCCAGCTGCTGCCTCCTCGCAACCTCgtaagtgttt ... tatctttcagGTCTCCACGATGAAGGAGTGACACGTTTGGTGATCTTTGTCTTGTCTATGC
EST: gi|164229676|gb|EL970962.1|EL970962
EST:     GCTGCCTCCTCGCAACCTC                         GTCTCCACGATGAAGGAGTGAAACGTTTGGTGATCTTTGTCTTGTCTATGC
genomic: GCTGCCTCCTCGCAACCTCgtaagtgttt ... tatctttcagGTCTCCACGATGAAGGAGTGACACGTTTGGTGATCTTTGTCTTGTCTATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actctttaaaggttctttcgaaatctgaaatgtgtattttctttttatctttcagGTCTCCACGATGAAGGAGTGACACGTTTGGTGATCTTTGTCTTGTCTATGCTTCTTGTGATGCTTCTGTCATAGTACCAGAACTAAGCCGGATCCAGTCT
                                tgtattttctttttat  CT-rich tract
                           aaatgtgtattttctt  TA-rich tract