1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtaaactaagaatccatagatgcaaaacaatgagaaagatagagaagctaattgtttttaatgtttcagCTTTTTTGAAAGCTGAAGAAGCAGAGGAGCCTCAAGCTGTGAGATATTAAGTTCTGTTGTTTTTTTTACAATTCCATAGATTTGTTGTATATAGAAGTAC
species | Arabidopsis thaliana |
transcript | AT1G59990.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AACTGCATTCAGCAGGAAGAGAGGTTTTAGGAACAAGGTTAAGAAGAGAG CTTTTT-GAAAGCTGAAGAAGCAGAEST: gi|125109572|gb|EL161957.1|EL161957
genomic: AACTGCATTCAGCAGGAAGAGAGGTTTTAGGAACAAGGTTAAGAAGAGAGgtaagtaaac ... aatgtttcagCTTTTTTGAAAGCTGAAGAAGCAGA
EST: AACTGCATTCAGCAGGAAGAGAGGTTTTAGGAACAAGGTTAAGAAGAGAG CTTTTTTGAAAGCTGAAGAAGCAGAGGAGCCTCAAGCTEST: gi|124749314|gb|EH839444.1|EH839444
genomic: AACTGCATTCAGCAGGAAGAGAGGTTTTAGGAACAAGGTTAAGAAGAGAGgtaagtaaac ... aatgtttcagCTTTTTTGAAAGCTGAAGAAGCAGAGGAGCCTCAAGCT
EST: AACTGCATTCAGCAGGAAGAGAGGTTTTAGGAACAAGGTTAAGAAGAGAG CTTTTT-GAAAGCT
genomic: AACTGCATTCAGCAGGAAGAGAGGTTTTAGGAACAAGGTTAAGAAGAGAGgtaagtaaac ... aatgtttcagCTTTTTTGAAAGCT
catagatgcaaaacaatgagaaagatagagaagctaattgtttttaatgtttcagCTTTTTTGAAAGCTGAAGAAGCAGAGGAGCCTCAAGCTGTGAGATATTAAGTTCTGTTGTTTTTTTTACAATTCCATAGATTTGTTGTATATAGAAGTAC
ttttaat putative branch site (score: 3)
taattgtttttaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaaactaagaatccatagatgcaaaacaatgagaaagatagagaagctaattgtttttaatgtttcagCTTTTTTGAAAGCTGAAGAAGCAGAGGAGCCTCAAGCTGTGAGATATTAAGTTCTGTTGTTTTTTTTACAATTCCATAGATTTGTTGTATATAGAAGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT