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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcaatggttcatggtatttgttcttattcattttcatgatgcttgtttgtcacttacaagatgtattttctttatatatttcagGCCATTTTTCTGTTTCAGAAGATTGAAAATGTGGAAGTATGCTTGTTTGGTATGTTCGTTCAGGAATTTGGGACAGACTCTGGACCTCCCAATGAGCGGC

Basic information

species Arabidopsis thaliana
transcript AT1G55970.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G55970.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA15G00250.1 (Glycine max), 3'ss of exon 9
--gtagcaatggtt-catggtatttgttcttattcattttcatgatgct--tgtttgtcacttacaagatgtattttctttatatatttcagGCCATTTTTCTGTTTCAGAAGATTGAAAATGTGGAAGTATGCTTGTTTGGTATGTTCGTTCAGGAATTTGGGACAGACTCTGGACCTCCCAATGAGCGGC
    ||  | |||| | |   |  |  || | ||  |  ||| |  | |  | ||| |     |        | |||   | |  ||||||||  || ||  |||||||||||||||||  ||||||||||||| | ||||| ||||  ||||| || |||||  | || | |  |  ||| ||| | ||||
gtaaagggaaggttgctttagagctagtcatgttggtaatcaagtcgttattatttattctggattttgatgacttttggtttccatttcagGTAATCTTGTTGTTTCAGAAGATTGAAGGTGTGGAAGTATGCCTCTTTGGCATGTATGTTCAAGAGTTTGGATCTGAATGTCAATTTCCGAATCAACGGC

upper sequence: AT1G55970.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv09s0054g01780.t01 (Vitis vinifera), 3'ss of exon 8
gtagcaatggttcatggta--tttgttcttattcattttcatgatgcttgtttgtcacttacaagatgtattttctttatatatttcagGCCATTTTTCTGTTTCAGAAGATTGAAAATGTGGAAGTATGCTTGTTTGGTATGTTCGTTCAGGAATTTGGGACAGACTCTGGACCTCCCAATGAGCGGC
|||   | | |  ||  ||  ||  |  || ||||| |   |||       ||      |  |      ||| ||||| |   || ||||  |||||  |||||||||||||||||   || ||||||||||| ||||| ||||  ||||| ||||||||  |||| | |  |   || ||| | || |
gtatgcaggatgtatattaagttgatgttttttcatatagttgacaaagacttaaattatgaactgaagattgtctttttcgtttccagGTAATTTTGTTGTTTCAGAAGATTGAAGGAGTAGAAGTATGCTTATTTGGGATGTATGTTCAAGAATTTGGATCAGAATGTCTATTCCCAAATCAACGTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttcatgatgcttgtttgtcacttacaagatgtattttctttatatatttcagGCCATTTTTCTGTTTCAGAAGATTGAAAATGTGGAAGTATGCTTGTTTGGTATGTTCGTTCAGGAATTTGGGACAGACTCTGGACCTCCCAATGAGCGGC
                     cacttac  putative branch site (score: 2)
                                    ttttctttat  putative PPT
                        ttacaagatgtatttt  TA-rich tract