1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaagttctgtctgcattgatgagccctatgtttacgcatatatttgtagtttttatcttgtcctaattttctatcttcgcttgcagCAACTGTGATCCGTGAGGAAGTTGGTCTTTCACTTGACAAAGCTGGAAAAGAGGTTCTTGGTAATGCTTCAAAGGTTGTCCTCACAAAGGAGACCTCGAC
species | Arabidopsis thaliana |
transcript | AT1G55490.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATATTGCCATTCTAACCGGAG CAACTGTGATCCGTGAGGAAGTTGGTCTTTCACTTGACAAAGCTGGAAAAGEST: gi|47832210|gb|CK121894.1|CK121894
genomic: ATATTGCCATTCTAACTGGAGgtaagttctg ... tcgcttgcagCAACTGTGATCCGTGAGGAAGTTGGTCTTTCACTTGACAAAGCTGGAAAAG
EST: TGGAGAGCGCAAGAGCCAATACCTTGATGATATTGCCATTCTAACTGGAG CAACTGTGATCCGTGAGGAAGTTGGTCTTTCACTTGACAAAGCTGGAAAAGEST: gi|125083434|gb|EL143995.1|EL143995
genomic: TGGAGAGCGCAAGAGCCAATACCTTGATGATATTGCCATTCTAACTGGAGgtaagttctg ... tcgcttgcagCAACTGTGATCCGTGAGGAAGTTGGTCTTTCACTTGACAAAGCTGGAAAAG
EST: TTGCCATTCTAACTGGAG CAACTGTGATCCGTGAGGAAGTTGGTCTTTCACTTGACAAAGCTGGAAAAG
genomic: TTGCCATTCTAACTGGAGgtaagttctg ... tcgcttgcagCAACTGTGATCCGTGAGGAAGTTGGTCTTTCACTTGACAAAGCTGGAAAAG
ttacgcatatatttgtagtttttatcttgtcctaattttctatcttcgcttgcagCAACTGTGATCCGTGAGGAAGTTGGTCTTTCACTTGACAAAGCTGGAAAAGAGGTTCTTGGTAATGCTTCAAAGGTTGTCCTCACAAAGGAGACCTCGAC
tcctaat putative branch site (score: 2)
ttttctatcttcgctt CT-rich tract
atatatttgtagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttctgtctgcattgatgagccctatgtttacgcatatatttgtagtttttatcttgtcctaattttctatcttcgcttgcagCAACTGTGATCCGTGAGGAAGTTGGTCTTTCACTTGACAAAGCTGGAAAAGAGGTTCTTGGTAATGCTTCAAAGGTTGTCCTCACAAAGGAGACCTCGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA