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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatccataagtttcttctttttaaggtttcttagctcattttcagtctcttcttgtaaatgaaatctaaaagtttctttcttgaagctcattttgttattttattttctttgtgagcagGCAAGATCTTTATTAGAAGAGTATGCGGTTGAGGAATTAGTTGATCCGAGGCTCGAAAAGCGATATTCAGAAACACAAGTCATTTGCATGATTCATACAG

Basic information

species Arabidopsis thaliana
transcript AT1G55200.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86087674|gb|DR383433.1|DR383433
EST:     AAGCAATGGATATCTACAGACCAAAGGGACAACAATGTTTAACTGAATGG                         GCAAGATCTTTATTAGAAGAGTATGCGGTTGAGGAATTAGTTGATCCGAGG
genomic: AAGCAATGGATATCTACAGACCAAAGGGACAACAATGTTTAACTGAATGGgtaaatccat ... ttgtgagcagGCAAGATCTTTATTAGAAGAGTATGCGGTTGAGGAATTAGTTGATCCGAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctaaaagtttctttcttgaagctcattttgttattttattttctttgtgagcagGCAAGATCTTTATTAGAAGAGTATGCGGTTGAGGAATTAGTTGATCCGAGGCTCGAAAAGCGATATTCAGAAACACAAGTCATTTGCATGATTCATACAG
 atctaaa  putative branch site (score: 3)
                          ttttgttattttattt  putative PPT
                       tcattttgttatttta  TA-rich tract