1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttttatatccttttaatcatgagtgactttttttttagctccattcattgtttacattgatttttaaatgtttctgtaatttgcagGATGCTCAAACTGCCATAAATGAGATGAATG
species | Arabidopsis thaliana |
transcript | AT1G54080.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTCCTTCCGTAATCAGCAG GATGCTCAAACTGCCATAAATGAGATGAATGEST: gi|86052517|gb|DR348274.1|DR348274
genomic: TTTCCTTCCGTAATCAGCAGgttttatatc ... taatttgcagGATGCTCAAACTGCCATAAATGAGATGAATG
EST: CTGGACGCTCAAGAAGGNNTTTTGGTTTTGTTTCCTTCCGGAATCAGCAG GATGCTCAAACTGCCATTAATGGAGATGAATGGTAAATGGGEST: gi|86052513|gb|DR348270.1|DR348270
genomic: CTGGACGCTCAAGA-GGC-TTT-GGTTTTGTTTCCTTCCGTAATCAGCAGgttttatatc ... taatttgcagGATGCTCAAACTGCCATAAATG-AGATGAATGGTAAATGGG
EST: AAACTGGACGCTCAAGAGGCTTTGGTTTTGTTTCCTTCCGTAATCAGCAG GATGCTCAAACTGCCATTAATGAGATGAATGEST: gi|125247911|gb|EL261996.1|EL261996
genomic: AAACTGGACGCTCAAGAGGCTTTGGTTTTGTTTCCTTCCGTAATCAGCAGgttttatatc ... taatttgcagGATGCTCAAACTGCCATAAATGAGATGAATG
EST: TTCCGTAATCAGCAG GATGCTCAAACTGCCATAAATGAGATGAATGEST: gi|124846534|gb|EH930971.1|EH930971
genomic: TTCCGTAATCAGCAGgttttatatc ... taatttgcagGATGCTCAAACTGCCATAAATGAGATGAATG
EST: AAACTGGACGCTCAAGAGGCTTTGGTTTTGTTTCCTTCCGTAATCAGCAG GATGCTCAAACTGCCATAAATGAGAEST: gi|125030133|gb|EL102402.1|EL102402
genomic: AAACTGGACGCTCAAGAGGCTTTGGTTTTGTTTCCTTCCGTAATCAGCAGgttttatatc ... taatttgcagGATGCTCAAACTGCCATAAATGAGA
EST: CCTTCCGTAATCAGCAG GATGCTCAAACTGCCATAAATGAGATGAATGEST: gi|86052514|gb|DR348271.1|DR348271
genomic: CCTTCCGTAATCAGCAGgttttatatc ... taatttgcagGATGCTCAAACTGCCATAAATGAGATGAATG
EST: AAACTGGACGCTCAAGAGGCTTTGGTTTTGTTTCCTTCCGTAATCAGCAG GATGCTCAAACTGCCATTAATGAGATGAATG
genomic: AAACTGGACGCTCAAGAGGCTTTGGTTTTGTTTCCTTCCGTAATCAGCAGgttttatatc ... taatttgcagGATGCTCAAACTGCCATAAATGAGATGAATG
tttttagctccattcattgtttacattgatttttaaatgtttctgtaatttgcagGATGCTCAAACTGCCATAAATGAGATGAATG
cattgat putative branch site (score: 4)
tttctgt putative PPT
attcattgtttacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttatatccttttaatcatgagtgactttttttttagctccattcattgtttacattgatttttaaatgtttctgtaatttgcagGATGCTCAAACTGCCATAAATGAGATGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG