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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttctacttcttaaacttatttgattaatttcttaaattttcttttatatccgagtggtttagttggaacttctttcacgcatattagGTTGCAGACTTTGGTGTTTCTGCACAATTAACCCGGACTATATCAAGGCGAAAG

Basic information

species Arabidopsis thaliana
transcript AT1G53165.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G53165.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: LOC_Os07g32400.2 (Oryza sativa), 3'ss of exon 6
-------------------------gtattttctacttcttaaacttatttgat-taatttcttaaattttcttttatatccgagtggtttagttggaacttct-ttcacgcatattagGTTGCAGACTTTGGTGTTTCTGCACAATTAACCCGGACTATATCAAGGCGAAAG
                           ||||| |  | | |   |    | |   | | ||||   |||   | |||  |   | |   |  |       || | ||         |||||||||||||||||||||||||| ||  | ||    || || |||||| |||||
gtataacctttctacgatttctcaatgattttatgttccattgtcaggatggtcctgagttctgttattaattcttagcttacaatatctatgcaaacgtttatatttttattccatagGTTGCAGACTTTGGTGTTTCTGCGCAGCTGACTAAAACAATGTCAAGGAGAAAG

upper sequence: AT1G53165.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GRMZM2G027756_T02 (Zea mays), 3'ss of exon 3
---------------------------gtattttctacttcttaaacttat--ttgattaatttcttaaattttcttttatatccgagtggtttagttggaacttctttcacgcatat--tagGTTGCAGACTTTGGTGTTTCTGCACAATTAACCCGGACTATATCAAGGCGAAAG
                           | ||||   | | |||    || |  |  ||  || |||    ||   |||||  ||  | |  | || |  |   ||  |    | ||    |||||||| ||||||||||||||||||||  | ||    || || || ||| | |||
gtataacttttatgaagggaaggttctgcatttaggaatgctttccattgtggtacatctatatctattgttgatttttagttcataata-tgtattctgttgttactatgtgtattccatagGTTGCGGACTTTGGTGTTTCTGCACAGCTGACTAAAACAATGTCTAGGAGGAAG

upper sequence: AT1G53165.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA12G35510.1 (Glycine max), 3'ss of exon 6
----------------------gtattttctacttcttaaacttatttgattaatttcttaaat--tttcttttata-tccgagtggtttagttgga-acttctttcacgcatattagGTTGCAGACTTTGGTGTTTCTGCACAATTAACCCGGACTATATCAAGGCGAAAG
                       ||| | | | || || |  |||| ||| |   ||   ||||  |     | ||| |  |||  ||  | ||| | || | |   | |   |  |||||||||| |||||||||||||| ||||||||  |||||||||||||| |||||
gtacgttatattctgacagaggttatatacaatttgtttattttatatgacttcattgaaaaatgatgcacctaataatttgagatgtggacttgcatacatgtggaatgt-caccagGTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACTATATCAAGGAGAAAG

upper sequence: AT1G53165.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA06G36130.2 (Glycine max), 3'ss of exon 6
-------------------------------------------gtattttctacttcttaaacttat---ttgattaattt----cttaaattttcttttatatccgagtggtttagttggaacttctttcacgcatat-tagGTTGCAGACTTTGGTGTTTCTGCACAATTAACCCGGACTATATCAAGGCGAAAG
                                           |      | |||||  ||| | ||   |  | ||||||      | || |  | |  || | |   ||  ||  |  |   || | | ||     |  |||||||||| ||||||||||||||||| |||||  | |||||||||||| |||||
gtatgtgtcttattctgagaggctataatccaattttttttatgaccagacgacttcaaaaaatgatacataaaataatttgagatgtgaactaacatgcatttgcatatgaatttctatgtgattttgtgactttcttacagGTTGCAGATTTTGGTGTTTCTGCACAGTTAACAAGAACTATATCAAGGAGAAAG

upper sequence: AT1G53165.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA12G27300.1 (Glycine max), 3'ss of exon 7
------------------gtattttctacttcttaaacttatttgat-taattt----cttaaattttcttttatatccgagtggtttagttggaacttctttcacgcatattagGTTGCAGACTTTGGTGTTTCTGCACAATTAACCCGGACTATATCAAGGCGAAAG
                  |  |     |||||  |||    |   |  ||||||    | | || |  | |  || | |   ||  ||  |   |  || |  |   | ||  |||||||||| ||||||||||||||||| |||||  | |||||||||||| |||||
gtttgtgtatttttataagactagaggacttcaaaaaacagtacaaaataatttgatacgtgaactaacatgcatttgcatatgaatttctgtcattttgtgactttcttac-agGTTGCAGATTTTGGTGTTTCTGCACAGTTAACAAGAACTATATCAAGGAGAAAG

upper sequence: AT1G53165.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA13G34970.1 (Glycine max), 3'ss of exon 7
---------------gtattttctacttcttaaacttatttgattaatttcttaaattttcttttatatccgagtggtttagttggaacttctttcacgca------tattagGTTGCAGACTTTGGTGTTTCTGCACAATTAACCCGGACTATATCAAGGCGAAAG
                 |  || ||     |    |||||| || | ||  || ||   |  |  || |   | |     |   |||  | | | || |         |  |||||||||| |||||||||||||| ||||| ||  |||||||||||||| |||||
gtatgttatattctgacaggttatatccaatttgtttattttatgatttcattgaaaaatgatgcatgtaataatttgagatacggacttgcatacatgtggaatgtcaccagGTTGCAGATTTTGGTGTTTCTGCTCAATTGACAAGGACTATATCAAGGAGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaattttcttttatatccgagtggtttagttggaacttctttcacgcatattagGTTGCAGACTTTGGTGTTTCTGCACAATTAACCCGGACTATATCAAGGCGAAAG
                                    cttctttcac  CT-rich tract
     tttcttttatat  TA-rich tract