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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatactaattttgagtttgtccaacagattttctttatatcctaactcggtgtgaaaaagtgggcaatcaatctgcattaatgctgaagaaaatattggctgctcaagattgacacgtttgctaactcatgtctctcagGTAGAGAAGGTTATTACAGAACTGAATAAGAACTTTCCTGCTGATGGTTTACTTCCCATCTATATAAATCCGGATAATGCTAATCCATCGTACTCTACCA

Basic information

species Arabidopsis thaliana
transcript AT1G51590.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G51590.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv09s0054g00230.t01 (Vitis vinifera), 3'ss of exon 2
gtagatactaattttgagtttgtccaacagattttctttatatcctaactcg-gtgtgaaaaagtgggcaatcaatctgcattaatgctgaagaaaatattggctgctcaagattgacacgtttgct---aactcatgtctctcagGTAGAGAAGGTTATTACAGAACTGAATAAGAACTTTCCTGCTGATGGTTTACTTCCCATCTATATAAATCCGGATAATGCTAATCCATCGTACTCTACCA
                                              |||| | ||  ||| |  | ||  || ||  |    |      |||  ||  |||  ||    | | || |   | | ||    || ||   | | |||||| ||||| ||||| |  || || ||||| |  ||||||||||||||||| |||||||| ||||| |||||  |||  |  |   |||| || || ||||
----------------------------------------------aactagagtcagaagacattggtcattaacttctgcttccaacgaaacaagcattttctcgggaggtttaatttgctggcattgaattctgatgtttcagGTTGAGAATGTTATCATTGAGCTTAATAAAACATTTCCTGCTGATGGTTTGCTTCCCATATATATTAATCCTCATAGAGGAACATCATCTTATTCGACCA

upper sequence: AT1G51590.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv09s0054g00370.t01 (Vitis vinifera), 3'ss of exon 7
gtagatactaattttgagtttgtccaacagattttctttatatcctaactcggtgtgaaaaagtgggcaatcaatctgcattaatgctgaagaaaatattggctgctcaagattgacacgtttgctaactcatgtctctcagGTAGAGAAGGTTATTACAGAACTGAATAAGAACTTTCCTGCTGATGGTTTACTTCCCATCTATATAAATCCGGATAATGCTAATCCATCGTACTCTACCA
                              ||  || |||  | ||   ||      |  ||    ||| |   |  ||   |    |    ||  |  ||||   |  |  || |   |||   |    |   | | |||||| ||||| ||||| |  || || ||||| |  ||||||||||||||||| |||||||| ||||| |||||  |||  |  |   |||| ||||| ||||
-----------------------------aatggtcattaacttctgcttc----caaggaaacaagcatt---ttcgcgggaggttt----aatttgctggca--ttgaatttaatgggttgaattctgctgatgtttcagGTTGAGAATGTTATCATTGAGCTTAATAAAACATTTCCTGCTGATGGTTTGCTTCCCATATATATTAATCCTCATAGAGGAACATCATCTTACTCGACCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaagaaaatattggctgctcaagattgacacgtttgctaactcatgtctctcagGTAGAGAAGGTTATTACAGAACTGAATAAGAACTTTCCTGCTGATGGTTTACTTCCCATCTATATAAATCCGGATAATGCTAATCCATCGTACTCTACCA
                                   tgctaac  putative branch site (score: 1)
                                             tgtctctc  putative PPT
     aaaatatt  TA-rich tract