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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttcatgtccgttttattcctttcttacaaaaaaaaattagttacatgattagaaactctgtttagatgatggtgttgatgccaatattcaccctgcatgcgctgctaatttgtgtttgtgatgcagCGATGGACATATCATCTGATCTTACTGCACTTGGGAGGACTCCAATAGCAGTGATATCAGCAGGCGTTAAATCAATACTTGATATTCCAAAGACTCTTGA

Basic information

species Arabidopsis thaliana
transcript AT1G50510.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G50510.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv06s0009g02380.t01 (Vitis vinifera), 3'ss of exon 6
gtatgtttcatgtccgttttattcctttcttacaaaaaaaaattagttacatgattagaaactctgtttagatgatggtgttgatgccaatattcaccctgcatgcgctgctaatttgtgtttgtgatgcagCGATGGACATATCATCTGATCTTACTGCACTTGGGAGGACTCCAATAGCAGTGATATCAGCAGGCGTTAAATCAATACTTGATATTCCAAAGACTCTTGA
                               ||  |||| | ||    |  |   |  |     | ||   || |    |   ||||    ||    |  | ||||     |    | | ||| |  |||||| ||||||||||| |||||||||||||  ||||| || |||||| | ||||| || || || || || ||||||||| | |||||||| |  || || ||
-----------------------------gaactgaaaacatttga--agctctctgaagtgattattggaattaacaagcccatgcattaatatgtcaggtatgcttgattttgatat-tttcttttgcagCAATGGACATATCTTCTGATCTTACTGAGCTTGGAAGAACTCCAGTGGCAGTTATCTCGGCTGGGGTAAAATCAATATTGGATATTCCCAGAACCCTGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttgatgccaatattcaccctgcatgcgctgctaatttgtgtttgtgatgcagCGATGGACATATCATCTGATCTTACTGCACTTGGGAGGACTCCAATAGCAGTGATATCAGCAGGCGTTAAATCAATACTTGATATTCCAAAGACTCTTGA
                               tgctaat  putative branch site (score: 2)
           aatattca  TA-rich tract