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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattttggtaatttactaaagggaataaatgccatcagtaactgccagtatcatattaacacactctttctcttttctgtcagATTTCCTGCTTATTGTCCTGAAAGATCTTCTTCCTCGTCGACCTGACCTAAAGTTGATTTTAATGAGTGCTACTTTGAACGCTGAGCTCTTTTCTTCTTA

Basic information

species Arabidopsis thaliana
transcript AT1G48650.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G48650.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA08G05480.1 (Glycine max), 3'ss of exon 7
gtaaattttggtaatttactaaagggaataaatgccat-cagtaactgccagtatcatatta-acacactctttctcttttc-tgtcagATTTCCTGCTTATTGTCCTGAAAGATCTTCTTCCTCGTCGACCTGACCTAAAGTTGATTTTAATGAGTGCTACTTTGAACGCTGAGCTCTTTTCTTCTTA
                     |    ||||| ||   | |   || |  |  | | |||| | ||  || | |  | ||  | |||||||||| || || ||||||||||| || ||||| |||| ||| |||||  | | ||||||||| ||||||||||| || || |||||||| |||||||| ||
-------------------gtagataaataactgttttacttcaattttctattttatatgatacttacccctggttttcccatgtcagATTTTCTTCTCATTGTCCTGAAGGAACTTCTCCCTCATCGCCCTGATTTGAGGTTGATTTTGATGAGTGCTACCTTAAATGCTGAGCTTTTTTCTTCATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgccatcagtaactgccagtatcatattaacacactctttctcttttctgtcagATTTCCTGCTTATTGTCCTGAAAGATCTTCTTCCTCGTCGACCTGACCTAAAGTTGATTTTAATGAGTGCTACTTTGAACGCTGAGCTCTTTTCTTCTTA
                         tattaac  putative branch site (score: 1)
                               cacactctttctcttt  CT-rich tract
                    tatcatattaa  TA-rich tract