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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcttttaactctcattactctgttcagtgctaagatgaaacttggtttaagctttctgtttttggtactgcagTTTGGTGAAGTTTTTAACACCTACCTCGGGTCTCCAAGGATACTGGGATCCATATCCAATCGATATGGAATTTAAACCACCGTGTATTGTTTTATCGACA

Basic information

species Arabidopsis thaliana
transcript AT1G44446.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G44446.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: LOC_Os10g41780.1 (Oryza sativa), 3'ss of exon 7
----------------------------------gtttcttttaactctcattactctgttcagtgctaagatgaaacttggtttaagctttctgt----------ttttggtactgcagTTTGGTGAAGTTTTTAACACCTACCTCGGGTCTCCAAGGATACTGGGATCCATATCCAATCGATATGGAATTTAAACCACCGTGTATTGTTTTATCGACA
                                    |||||||   | |  |||     |  |  || | |  ||||  |  |   |  |     |          | ||  |    ||| ||||||||||| || |||||| | || || || |||||||||||||||||||| || ||||| |||||||||  |||||| || || || || || || 
gtatttacatacatatattttcacagccatgtggaattcttttttttttttttagaaaatggatagccatgtggaaatgtcttcagaaatcatcatgctgatgctatgttcatttcccagCTTGGTGAAGTTCTTGACACCTTCATCTGGGCTTCAAGGATACTGGGATCCATACCCGATCGACATGGAATTTCGACCACCATGCATGGTGTTGTCAACC

upper sequence: AT1G44446.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GRMZM2G038487_T01 (Zea mays), 3'ss of exon 7
--------------gtttctttt---aactctcattactc--tgttcagtgctaagatgaaacttggtttaagctttctgtttttggtactgcagTTTGGTGAAGTTTTTAACACCTACCTCGGGTCTCCAAGGATACTGGGATCCATATCCAATCGATATGGAATTTAAACCACCGTGTATTGTTTTATCGACA
               | ||  ||   ||  || | |      | | || | | |  ||   ||   | |      |   || ||   |    ||||||||||||||| ||||||||| | || || |||||||| ||||||||||| || || ||||| ||||| ||   ||| || ||||| || || ||||| 
gtatgtacctttgcatctcacttgtgaaaactaactgacgaatatacacttccataatatcaccatggtggctgatgtcgtgttgtttctgtcagTTTGGTGAAGTTCTTAACACCTGCGTCTGGGCTCCAAGGGTACTGGGATCCTTACCCGATCGACATGGAGTTCCGACCGCCATGTATGGTCTTGTCGACC

upper sequence: AT1G44446.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA14G23860.1 (Glycine max), 3'ss of exon 7
---------------gtttcttttaactctcattactctgttcagtgctaagatgaaact-tggttta---agctttct-----gtttttggtactgcagTTTGGTGAAGTTTTTAACACCTACCTCGGGTCTCCAAGGATACTGGGATCCATATCCAATCGATATGGAATTTAAACCACCGTGTATTGTTTTATCGACA
               |  | || | |  ||| | ||| | |    |   |  || ||  | | | | |   ||  | ||     |  ||||    ||||| |||||||| ||||| |||||| | || || || ||||||||||||||||| ||||| ||||||||||| |||  |||||| || || ||  |||| || 
taatggaatagttcagccttttgttaggctcttaactttatcttataaaacaataaatttctagctcactcagtctccttgcatgaatttgaacttgcagCTTGGTGAATTTTTTGACACCTGCATCTGGCCTGCAAGGATACTGGGATCCCTATCCTATCGATATGGAGTTTCGACCACCCTGCATGGTACTATCAACC

upper sequence: AT1G44446.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA04G42840.1 (Glycine max), 3'ss of exon 7
------------gtttcttttaactc-----tcattactctgttcagtgctaagatgaaa--cttggtt---taagctt--tctgtttttggtactgcagTTTGGTGAAGTTTTTAACACCTACCTCGGGTCTCCAAGGATACTGGGATCCATATCCAATCGATATGGAATTTAAACCACCGTGTATTGTTTTATCGACA
            | ||  |||||  |     ||    || | |    ||  |||||  |   ||||||    ||  ||     ||  ||||    ||||| |||||||| ||||| |||||| | || || || |||||||||||||| || |||||||| |||||||| |||   ||||| || || ||| |||| || 
tggataaaacgagattaatttaaggcataaatctaagctttatcttctgaaaagatacatttcttggtcacgtagtctcagcatggatttgaacttgcagCTTGGTGAAATTTTTGACACCTGCATCTGGCCTACAAGGATACTGGGACCCCTATCCAATTGATATGGAGTTTCGGCCACCTTGCATGGTTCTATCAACC

upper sequence: AT1G44446.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA13G03430.1 (Glycine max), 3'ss of exon 7
----------------gtttcttttaa-ctctca---ttactctgttcagtgctaagatgaaacttggtttaagctttctgtt----tttggtactgcagTTTGGTGAAGTTTTTAACACCTACCTCGGGTCTCCAAGGATACTGGGATCCATATCCAATCGATATGGAATTTAAACCACCGTGTATTGTTTTATCGACA
                 | | | |||  |||| |   |||   | |  |    |||  |   |  |   | |  ||   ||      ||||    ||||| |||||||| ||||| |||||| | || || || ||||||||||||||||| ||||| || |||||||| |||  |||||| || || ||  |||| || 
acttcagatttttgttatatgtcttaggctcttagctttatcttatgaaacaataaatttgtagctcactcagtctccttgcatgaatttgaacttgcagCTTGGTGAATTTTTTGACACCTGCATCTGGCCTGCAAGGATACTGGGATCCCTATCCTATTGATATGGAGTTTCGACCACCTTGCATGGTACTATCAACC

upper sequence: AT1G44446.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA06G11920.1 (Glycine max), 3'ss of exon 7
--------------gtttcttttaactctca---ttactctgttcagtgctaagatgaaacttggt---ttaagctttctgtt----tttggtactgcagTTTGGTGAAGTTTTTAACACCTACCTCGGGTCTCCAAGGATACTGGGATCCATATCCAATCGATATGGAATTTAAACCACCGTGTATTGTTTTATCGACA
              ||||  |||||  |  |    ||  || |    |  | | |     ||||||   |||| |    ||      ||||    ||||| |||||||| || || |||||| | || || || |||||||||||||| || |||||||| |||||||| |||  |||||| || || ||| |||| || 
gatggatgaacaaggtttaatttaaggcgtaaatctaagctttatcttcttgatacatttcttggtcagttaatcccattgcatggatttgaacttgcagCTTGGTGAAATTCTTGACACCTGCATCTGGCCTACAAGGATACTGGGACCCCTATCCAATTGATATGGAGTTTCGACCACCTTGCATGGTTCTATCAACC

upper sequence: AT1G44446.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv18s0001g02700.t01 (Vitis vinifera), 3'ss of exon 6
----gtttcttttaactctcattactctgttcagtgctaagatgaaacttggtttaagctttctgtttttggtactg-cagTTTGGTGAAGTTTTTAACACCTACCTCGGGTCTCCAAGGATACTGGGATCCATATCCAATCGATATGGAATTTAAACCACCGTGTATTGTTTTATCGACA
    ||| || | ||   |   |    || | | |    ||     |    | ||||| ||| | || |  | | |  ||| ||||| || || || |||||| | || || |||||||||||||||||||| || || || ||||||||||||  |||||| ||||| ||  | || || 
gtttgttcctgtcaatattgcatttcatggttattttggagggcccatccagcttaagttttgtattatctgaattctcagCTTGGTAAAATTCTTGACACCTGCATCTGGACTCCAAGGATACTGGGATCCCTACCCCATAGATATGGAATTTCGACCACCTTGTATGGTGCTGTCAACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgttcagtgctaagatgaaacttggtttaagctttctgtttttggtactgcagTTTGGTGAAGTTTTTAACACCTACCTCGGGTCTCCAAGGATACTGGGATCCATATCCAATCGATATGGAATTTAAACCACCGTGTATTGTTTTATCGACA
                                      tgttttt  TA-rich tract