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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttgtctttaagacttttttaaaaaacattttaccaaaaaaagtttctaggtctgccttatttttctaataattgaaataagatttgtcatcttctttgtggcagGGTCGTAACATATATGACGGGTGTTGTCAGTTGGATATCCAGTTCTCAAA

Basic information

species Arabidopsis thaliana
transcript AT1G43190.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164150318|gb|ES178985.1|ES178985
EST:     GGTACAACAGTGTGCTGCCTCTGCTAGAACTGCNCTACAG                         GGTCGTAACATATATGACGGGTGTTGTCAGTTGGATATCCAGTTCTCAAAC
genomic: GGTACAACAGTGTGCTGCCTCTGCTAGAACTGCTCTACAGgtacttgtct ... tttgtggcagGGTCGTAACATATATGACGGGTGTTGTCAGTTGGATATCCAGTTCTCAAAC
EST: gi|164033136|gb|ES106332.1|ES106332
EST:     GGTACAACAGTGTGCTGCCTCTGCTAGAACTGCTCTACAG                         GGTCGTAACATATATGACGGGTGTTGTCAGTTGGATATCCAGTTCTCAAAC
genomic: GGTACAACAGTGTGCTGCCTCTGCTAGAACTGCTCTACAGgtacttgtct ... tttgtggcagGGTCGTAACATATATGACGGGTGTTGTCAGTTGGATATCCAGTTCTCAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctgccttatttttctaataattgaaataagatttgtcatcttctttgtggcagGGTCGTAACATATATGACGGGTGTTGTCAGTTGGATATCCAGTTCTCAAA
             ttctaat  putative branch site (score: 2)
 tttgtcatcttcttt  putative PPT
 ttatttttctaataat  TA-rich tract