1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtataacgaacaacctttcttatcgttcgtttttccatcatctattaaaccttgaattatatattgactagcatctgatacatattagtattttgtcaattggttggatttatttattttctgtctacagAGCATTTATAGTGAATCTTGGCGATATGCTGGAACGTTGGAGCAATGGCTTTTTTAA
species | Arabidopsis thaliana |
transcript | AT1G35190.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GATAAGAACGCGATGCCGCAGAAGTGGGAATATGTACCGCCGATTAAAGG AGCATTTATAGTGEST: gi|86074628|gb|DR370385.1|DR370385
genomic: GATAAGAACGCGATGCCGCAGAAGTGGGAATATGTACCGCCGATTAAAGGgtataacgaa ... ctgtctacagAGCATTTATAGTG
EST: GATAAGAACGCGATGCCGCAGAAGTGGGAATATGTACCGCCGATTAAAGG AGCATTTATAGTGAATCTTGGCGATATGCTGGAACGTTGGAGCAATGGCTT
genomic: GATAAGAACGCGATGCCGCAGAAGTGGGAATATGTACCGCCGATTAAAGGgtataacgaa ... ctgtctacagAGCATTTATAGTGAATCTTGGCGATATGCTGGAACGTTGGAGCAATGGCTT
tgatacatattagtattttgtcaattggttggatttatttattttctgtctacagAGCATTTATAGTGAATCTTGGCGATATGCTGGAACGTTGGAGCAATGGCTTTTTTAA
atctgat putative branch site (score: 4)
tttatttattttct putative PPT
ttggatttatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataacgaacaacctttcttatcgttcgtttttccatcatctattaaaccttgaattatatattgactagcatctgatacatattagtattttgtcaattggttggatttatttattttctgtctacagAGCATTTATAGTGAATCTTGGCGATATGCTGGAACGTTGGAGCAATGGCTTTTTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA