1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacaacgatagatgaaacaactctacttttgccctcttcaatgttctttaaagctaatcagatcttgtttcttatttttcagGCCAGTGTCCCCAGAAGAGTTAAGAAAAACGGGCAAGTGTCCACTAACACCAGAGGAAGCAACTCTGGTTCTTGCTGGTCTTGGATTCAAGAGAAAAACA
species | Arabidopsis thaliana |
transcript | AT1G29200.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TACCGTGAAGATCATTTCCCTCTTCTACTCAAACGTTTGAAGAAATCAAA GCCAGTGTCCCCAGAAGAGTTAAGAAAAACGGGCAAGTGTCCACTAACACCEST: gi|116408966|gb|EG451558.1|EG451558
genomic: TACCGTGAAGATCATTTCCCTCTTCTACTCAAACGTTTGAAGAAATCAAAgtacaacgat ... tatttttcagGCCAGTGTCCCCAGAAGAGTTAAGAAAAACGGGCAAGTGTCCACTAACACC
EST: TACCGTGAAGATCATTTCCCTCTTCTACTCAAACGTTTGAAGAAATCAAA GCCAGTGTCCCCAGAAGAGTTAAGAAAAACGGGCAAGTGTCCACTAACACCEST: gi|116408964|gb|EG451556.1|EG451556
genomic: TACCGTGAAGATCATTTCCCTCTTCTACTCAAACGTTTGAAGAAATCAAAgtacaacgat ... tatttttcagGCCAGTGTCCCCAGAAGAGTTAAGAAAAACGGGCAAGTGTCCACTAACACC
EST: TACCGTGAAGATCATTTCCCTCTTCTACTCAAACGTTTGAAGAAATCAAA GCCAGTGTCCCCAGAAGAGTTAAGAAAAACGGGCAAGTGTCCACTAACACCEST: gi|116409002|gb|EG451594.1|EG451594
genomic: TACCGTGAAGATCATTTCCCTCTTCTACTCAAACGTTTGAAGAAATCAAAgtacaacgat ... tatttttcagGCCAGTGTCCCCAGAAGAGTTAAGAAAAACGGGCAAGTGTCCACTAACACC
EST: TACCGTGAAGATCATTTCCCTCTTCTACTCAAACGTTTGAAGAAATCAAA GCCAGTGTCCCCAGAAGEST: gi|116408965|gb|EG451557.1|EG451557
genomic: TACCGTGAAGATCATTTCCCTCTTCTACTCAAACGTTTGAAGAAATCAAAgtacaacgat ... tatttttcagGCCAGTGTCCCCAGAAG
EST: TACCGTGAAGATCATTTCCCTCTTCTACTCAAACGTTTGAAGAAATCAAA GCCAGTGTCCCCAGAAGAGTTAAGAAAAACGGGCAAGTGTCCACTAACACC
genomic: TACCGTGAAGATCATTTCCCTCTTCTACTCAAACGTTTGAAGAAATCAAAgtacaacgat ... tatttttcagGCCAGTGTCCCCAGAAGAGTTAAGAAAAACGGGCAAGTGTCCACTAACACC
tttgccctcttcaatgttctttaaagctaatcagatcttgtttcttatttttcagGCCAGTGTCCCCAGAAGAGTTAAGAAAAACGGGCAAGTGTCCACTAACACCAGAGGAAGCAACTCTGGTTCTTGCTGGTCTTGGATTCAAGAGAAAAACA
agctaat putative branch site (score: 3)
tcttgtttcttatttt putative PPT
ttgtttcttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaacgatagatgaaacaactctacttttgccctcttcaatgttctttaaagctaatcagatcttgtttcttatttttcagGCCAGTGTCCCCAGAAGAGTTAAGAAAAACGGGCAAGTGTCCACTAACACCAGAGGAAGCAACTCTGGTTCTTGCTGGTCTTGGATTCAAGAGAAAAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA