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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttcctaactcttggagaatgggatcaaacatgttgtcttgattgatcttcttttacattttgcgttgagtaaaagggattttttgtggttttgaacagAACATTACTGCAGTCCCAAAACAAAAAAGGGACAGAGCTTTTGGTTTCTTGGACACATTTGGTTTGGGAACTACTCTGTCTCATCCTGAGAATTTGATGG

Basic information

species Arabidopsis thaliana
transcript AT1G28100.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86043029|gb|DR338784.1|DR338784
EST:     GAAGTAGGACTCCCAAGCCAAGTTGCAAGATTTTCAAAA                         AACATTACTGCAGTCCCAAAACAAAAAAGGGACAGAGCTTTTGGTTTCTTG
genomic: GAAGTAGGACTCCCAAGCCAAGTTGCAAGATTTTCAAAAgttagtgaca ... ttttgaacagAACATTACTGCAGTCCCAAAACAAAAAAGGGACAGAGCTTTTGGTTTCTTG
EST: gi|86081816|gb|DR377575.1|DR377575
EST:     GACTCCCAAGCCAAGTTGCAAGATTTTCHAAA                         AACATTACTGCAGTCCCAAAACAAAAAAGGGACAGAGCTTTTGGTTTCTTG
genomic: GACTCCCAAGCCAAGTTGCAAGATTTTCAAAAgttagtgaca ... ttttgaacagAACATTACTGCAGTCCCAAAACAAAAAAGGGACAGAGCTTTTGGTTTCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatcttcttttacattttgcgttgagtaaaagggattttttgtggttttgaacagAACATTACTGCAGTCCCAAAACAAAAAAGGGACAGAGCTTTTGGTTTCTTGGACACATTTGGTTTGGGAACTACTCTGTCTCATCCTGAGAATTTGATGG
 gattgat  putative branch site (score: 4)
       ttttacatttt  TA-rich tract