1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaataagacttctgtataccaaaaccctttccttttaatttgtatgctttatttcttatacttgtttgtttactttgcagCGTCTATTGCGAATGAAGATGGCTACTTTCAAGCTGAACTTGCTCTGCAGATGGAGCCCTAGTGACTTTGAGCTTTACAGAGAAGATCTGTCAGAGCTTT
species | Arabidopsis thaliana |
transcript | AT1G25260.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTG CGTCTATTGCGAATGAAGATGGCTACTTTEST: gi|86075213|gb|DR370970.1|DR370970
genomic: TAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTGgtaataagac ... tactttgcagCGTCTATTGCGAATGAAGATGGCTACTTT
EST: TAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTG CGTCTATTGCGAATGAAGATGGCTACTTTCAAGCTGAACTTGCTCTGCAGAEST: gi|86050068|gb|DR345823.1|DR345823
genomic: TAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTGgtaataagac ... tactttgcagCGTCTATTGCGAATGAAGATGGCTACTTTCAAGCTGAACTTGCTCTGCAGA
EST: TAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTG CGTCTATTGCGAATGAAGATGGCTACTTTCAAGCTGAACTTGCTCTGCAGAEST: gi|124982451|gb|EL055260.1|EL055260
genomic: TAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTGgtaataagac ... tactttgcagCGTCTATTGCGAATGAAGATGGCTACTTTCAAGCTGAACTTGCTCTGCAGA
EST: CGCCAAAATCAGCCCACATTTTG CGTCTATTGCGAATGAAGATGGCTACTTTCAAGCTGAACTTGCTCTGCAGAEST: gi|164121943|gb|ES162018.1|ES162018
genomic: CGCCAAAATCAGCCCACATTTTGgtaataagac ... tactttgcagCGTCTATTGCGAATGAAGATGGCTACTTTCAAGCTGAACTTGCTCTGCAGA
EST: TAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTG CGTCTATTGCGAAEST: gi|125015187|gb|EL087456.1|EL087456
genomic: TAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTGgtaataagac ... tactttgcagCGTCTATTGCGAA
EST: TAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTG CGTCTATTGCGAATGAAGATGGCTACTTTCAAGCTGAACTTGEST: gi|125221580|gb|EL235665.1|EL235665
genomic: TAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTGgtaataagac ... tactttgcagCGTCTATTGCGAATGAAGATGGCTACTTTCAAGCTGAACTTG
EST: AGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATACAGCCCACATTTTG CGTCTATTGCGAATGAAGATGGCTACTTT
genomic: AGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAAT-CAGCCCACATTTTGgtaataagac ... tactttgcagCGTCTATTGCGAATGAAGATGGCTACTTT
cctttccttttaatttgtatgctttatttcttatacttgtttgtttactttgcagCGTCTATTGCGAATGAAGATGGCTACTTTCAAGCTGAACTTGCTCTGCAGATGGAGCCCTAGTGACTTTGAGCTTTACAGAGAAGATCTGTCAGAGCTTT
ttttaat putative branch site (score: 3)
tttacttt putative PPT
ttttaatttgtatgct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataagacttctgtataccaaaaccctttccttttaatttgtatgctttatttcttatacttgtttgtttactttgcagCGTCTATTGCGAATGAAGATGGCTACTTTCAAGCTGAACTTGCTCTGCAGATGGAGCCCTAGTGACTTTGAGCTTTACAGAGAAGATCTGTCAGAGCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT